PH01003606G0050's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G57345 : 4.00E-19
Blast annotation: -
2.Location
Scaffold: PH01003606
Strand: +
| Region | Start | End |
| gene | 19545 | 21447 |
| mRNA | 19545 | 21447 |
| exon | 19545 | 20127 |
| exon | 20497 | 21447 |
| CDS | 19817 | 20127 |
| CDS | 20497 | 20719 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000094 | RLK-Pelle_LRR-Xa (from iTAK) Biosynthesis_of_unsaturated_fatty_acids Fatty_acid_biosynthesis fatty acid metabolic process, |
| coexpression network | CFinderM000829 | RLK-Pelle_LRR-Xa (from iTAK) alternative_oxidase_activity isopentenyl-diphosphate delta-isomerase activity, Terpenoid_backbone_biosynthesis CAMK_CAMKL-CHK1 (from iTAK) |
| coexpression network | CFinderM000981 | alternative_oxidase_activity Arachidonic_acid_metabolism Metabolism_of_xenobiotics_by_cytochrome_P450 chloroplast, structural molecule activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07466.10 | DUF1517 | 77 | 172 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.