PH01003621G0090's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G04840 : 2.70E-36
Blast annotation: bZIP protein
2.Location
Scaffold: PH01003621
Strand: +
| Region | Start | End |
| gene | 49457 | 55580 |
| mRNA | 49457 | 55580 |
| exon | 49457 | 50352 |
| exon | 51610 | 51685 |
| exon | 51776 | 51902 |
| exon | 53126 | 53314 |
| exon | 53980 | 54040 |
| exon | 54233 | 54322 |
| exon | 54516 | 55580 |
| CDS | 49793 | 50352 |
| CDS | 51610 | 51685 |
| CDS | 51776 | 51902 |
| CDS | 53126 | 53314 |
| CDS | 53980 | 54040 |
| CDS | 54233 | 54322 |
| CDS | 54516 | 55104 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001014 | SET Transcription_Regulator(from iTAK) endoplasmic reticulum, nucleus, ubiquitin ligase complex, histone_methylation |
| coexpression network | CFinderM001362 | Protein_processing_in_endoplasmic_reticulum mannose biosynthetic process, Lysine_degradation SET Transcription_Regulator(from iTAK) histone_methylation phosphomannomutase activity, histone_lysine_methylation |
| coexpression network | CFinderM001556 | RNA_transport bZIP Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.