Annotation of co-expression genes

PH01003627G0110's details annotation

1.Annotation

ICBR annotation: receptor kinase, putative, expressed

Blast result AT5G67200 : 3.00E-125
Blast annotation: Leucine-rich repeat protein kinase family protein

2.Location

Scaffold: PH01003627
Strand: -

RegionStartEnd
gene8637293046
mRNA8637293046
exon8637288517
exon9059991676
exon9202493046
CDS8795888517
CDS9059991676
CDS9202492116

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000375RLK-Pelle_LRR-III (from iTAK)
protein phosphorylation,
protein kinase activity,
transferase activity, transferring phosphorus-containing groups,
ATP binding,
RLK-Pelle_LRR-VII-1 (from iTAK)
protein binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00069.24Pkinase303554

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0005515protein binding
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.