Annotation of co-expression genes

PH01003660G0050's details annotation

1.Annotation

ICBR annotation: zinc finger, C3HC4 type domain containing protein, expressed

Blast result AT3G58030 : 2.50E-28
Blast annotation: RING/U-box superfamily protein

2.Location

Scaffold: PH01003660
Strand: -

RegionStartEnd
gene4570347704
mRNA4570347704
exon4570347704
CDS4573547195

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000035ubiquitin-dependent protein catabolic process,
coexpression networkCFinderM000246Protein_processing_in_endoplasmic_reticulum
coexpression networkCFinderM000575Protein_processing_in_endoplasmic_reticulum
zinc ion binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13920.5zf-C3HC4_3262309

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Protein processing in endoplasmic reticulumE3 ubiquitin-protein ligase RNF5 [EC:6.3.2.19]ko04141K10666

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding
GO:0008270zinc ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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