Annotation of co-expression genes

PH01003720G0120's details annotation

1.Annotation

ICBR annotation: MDR-like ABC transporter, putative, expressed

Blast result AT2G47000 : 4.00E-161
Blast annotation: ATP binding cassette subfamily B4

2.Location

Scaffold: PH01003720
Strand: +

RegionStartEnd
gene100404107070
mRNA100404107070
exon100404101104
exon102067102584
exon102682102955
exon103056103689
exon104083104394
exon104446104713
exon104815105081
exon105171105434
exon105675105797
exon106364107070
CDS100966101104
CDS102067102584
CDS102682102955
CDS103056103689
CDS104083104394
CDS104446104713
CDS104815105081
CDS105171105434
CDS105675105797
CDS106364106411

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000851CMGC_GSK (from iTAK)
regulation_of_DNA-templated_transcription,_elongation

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00005.26ABC_tran111260
PF00664.22ABC_membrane425520
PF00664.22ABC_membrane529813
PF00005.26ABC_tran883942

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0005524ATP binding
GO:0006810transport
GO:0016021integral to membrane
GO:0016887ATPase activity
GO:0017111nucleoside-triphosphatase activity
GO:0042626ATPase activity, coupled to transmembrane movement of substances
GO:0055085transmembrane transport

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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