PH01003742G0070's details annotation
1.Annotation
ICBR annotation: tRNA-dihydrouridine synthase 3-like, putative, expressed
Blast result AT3G01130 : 2.20E-09
Blast annotation: -
2.Location
Scaffold: PH01003742
Strand: +
| Region | Start | End |
| gene | 45539 | 48134 |
| mRNA | 45539 | 48134 |
| exon | 45539 | 46007 |
| exon | 46120 | 46185 |
| exon | 47595 | 47647 |
| exon | 47716 | 48134 |
| CDS | 45960 | 46007 |
| CDS | 46120 | 46185 |
| CDS | 47595 | 47647 |
| CDS | 47716 | 47848 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000833 | 7-methylguanosine mRNA capping, mRNA processing, mRNA guanylyltransferase activity, Ubiquitin_mediated_proteolysis mRNA_surveillance_pathway |
| coexpression network | CFinderM000834 | Ubiquitin_mediated_proteolysis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.