PH01003750G0150's details annotation
1.Annotation
ICBR annotation: ribosomal protein S17, putative, expressed
Blast result AT5G23740 : 8.10E-61
Blast annotation: ribosomal protein S11-beta
2.Location
Scaffold: PH01003750
Strand: -
| Region | Start | End |
| gene | 111450 | 116747 |
| mRNA | 111450 | 116747 |
| exon | 111450 | 113052 |
| exon | 113139 | 113283 |
| exon | 113839 | 113939 |
| exon | 114016 | 114056 |
| exon | 115348 | 116747 |
| CDS | 112959 | 113052 |
| CDS | 113139 | 113283 |
| CDS | 113839 | 113939 |
| CDS | 114016 | 114056 |
| CDS | 115348 | 115359 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000623 | intracellular, Ribosome translation, structural constituent of ribosome, HB-other Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF16205.4 | Ribosomal_S17_N | 4 | 72 |
| PF00366.19 | Ribosomal_S17 | 74 | 130 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.