PH01003811G0160's details annotation
1.Annotation
ICBR annotation: SWIM zinc finger family protein, putative, expressed
Blast result AT1G60560 : 0.00E+00
Blast annotation: SWIM zinc finger family protein
2.Location
Scaffold: PH01003811
Strand: +
| Region | Start | End |
| gene | 86577 | 91511 |
| mRNA | 86577 | 91511 |
| exon | 86577 | 86932 |
| exon | 87768 | 88089 |
| exon | 88204 | 88855 |
| exon | 88995 | 89194 |
| exon | 89289 | 89533 |
| exon | 89622 | 89839 |
| exon | 89922 | 89987 |
| exon | 90042 | 91511 |
| CDS | 86782 | 86932 |
| CDS | 87768 | 88089 |
| CDS | 88204 | 88855 |
| CDS | 88995 | 89194 |
| CDS | 89289 | 89533 |
| CDS | 89622 | 89839 |
| CDS | 89922 | 89987 |
| CDS | 90042 | 90434 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001080 | nucleocytoplasmic transport, small GTPase mediated signal transduction, GTP_catabolic_process protein transport, GTPase activity, signal transduction, GTP binding, intracellular protein transport, intracellular, membrane, |
| coexpression network | CFinderM001229 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.