Annotation of co-expression genes

PH01003839G0010's details annotation

1.Annotation

ICBR annotation: PPR repeat domain containing protein, putative, expressed

Blast result AT5G01110 : 1.20E-77
Blast annotation: Tetratricopeptide repeat (TPR)-like superfamily protein

2.Location

Scaffold: PH01003839
Strand: -

RegionStartEnd
gene58109784
mRNA58109784
exon58108116
exon91079784
CDS61178116
CDS91079275

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001298HB-other Transcription_Regulator(from PlantTFDB)
coexpression networkCFinderM001552HB-other Transcription_Regulator(from PlantTFDB)
Protein_processing_in_endoplasmic_reticulum
coexpression networkCFinderM001553seryl-tRNA aminoacylation,
serine-tRNA ligase activity,
Regulation_of_autophagy
tRNA aminoacylation for protein translation,
ribonuclease activity,
Aminoacyl-tRNA_biosynthesis

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13041.5PPR_2173215
PF13041.5PPR_2276324
PF13041.5PPR_2345394
PF13041.5PPR_2415464
PF01535.19PPR489517
PF13041.5PPR_2520569
PF13041.5PPR_2593639
PF13041.5PPR_2660698

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
nullnull

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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