PH01003955G0060's details annotation
1.Annotation
ICBR annotation: WD domain, G-beta repeat domain containing protein, expressed
Blast result AT5G64630 : 6.00E-159
Blast annotation: Transducin/WD40 repeat-like superfamily protein
2.Location
Scaffold: PH01003955
Strand: +
| Region | Start | End |
| gene | 56115 | 60766 |
| mRNA | 56115 | 60766 |
| exon | 56115 | 56843 |
| exon | 57009 | 57120 |
| exon | 57301 | 57327 |
| exon | 57893 | 57965 |
| exon | 58048 | 58151 |
| exon | 58236 | 58450 |
| exon | 58525 | 58618 |
| exon | 58733 | 58799 |
| exon | 59268 | 59356 |
| exon | 59453 | 59591 |
| exon | 59705 | 59805 |
| exon | 60437 | 60766 |
| CDS | 56730 | 56843 |
| CDS | 57009 | 57120 |
| CDS | 57301 | 57327 |
| CDS | 57893 | 57965 |
| CDS | 58048 | 58151 |
| CDS | 58236 | 58450 |
| CDS | 58525 | 58618 |
| CDS | 58733 | 58799 |
| CDS | 59268 | 59356 |
| CDS | 59453 | 59591 |
| CDS | 59705 | 59805 |
| CDS | 60437 | 60645 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000950 | ER to Golgi vesicle-mediated transport, Mismatch_repair Golgi membrane, cis-Golgi network, SNARE_interactions_in_vesicular_transport Mismatch_repair |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00400.31 | WD40 | 11 | 40 |
| PF00400.31 | WD40 | 59 | 91 |
| PF00400.31 | WD40 | 109 | 140 |
| PF00400.31 | WD40 | 146 | 181 |
| PF00400.31 | WD40 | 336 | 361 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.