PH01004043G0030's details annotation
1.Annotation
ICBR annotation: G10 protein, putative, expressed
Blast result AT4G21110 : 2.90E-73
Blast annotation: G10 family protein
2.Location
Scaffold: PH01004043
Strand: -
| Region | Start | End |
| gene | 36446 | 40383 |
| mRNA | 36446 | 40383 |
| exon | 36446 | 37108 |
| exon | 37528 | 37715 |
| exon | 37795 | 37901 |
| exon | 38520 | 40383 |
| CDS | 36953 | 37108 |
| CDS | 37528 | 37715 |
| CDS | 37795 | 37901 |
| CDS | 38520 | 38689 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000995 | nucleus, riboflavin kinase activity, RLK-Pelle_LRR-II (from iTAK) B3-ARF Transcription_Regulator(from iTAK) ARF Transcription_Regulator(from PlantTFDB) Riboflavin_metabolism DNA_replication Mismatch_repair Nucleotide_excision_repair riboflavin biosynthetic process, response to hormone stimulus, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01125.16 | G10 | 62 | 204 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Spliceosome | bud site selection protein 31 | ko03041 | K12873 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005634 | nucleus |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.