Annotation of co-expression genes

PH01004098G0010's details annotation

1.Annotation

ICBR annotation: phosphoesterase family protein, putative, expressed

Blast result AT3G03530 : 0.00E+00
Blast annotation: non-specific phospholipase C4

2.Location

Scaffold: PH01004098
Strand: +

RegionStartEnd
gene114006
mRNA114006
exon11633
exon28043213
exon32814006
CDS11633
CDS28043213
CDS32813804

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000192protein serine/threonine kinase activity,
protein kinase activity,
exonuclease activity,
protein phosphorylation,
transferase activity, transferring phosphorus-containing groups,
ATP binding,
polysaccharide_binding
RLK-Pelle_SD-2b (from iTAK)
RLK-Pelle_WAK (from iTAK)
ubiquitin ligase complex,
RLK-Pelle_LRR-Xb-2 (from iTAK)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF04185.13Phosphoesterase5373

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Inositol phosphate metabolismphospholipase C [EC:3.1.4.3]ko00562K01114
Glycerophospholipid metabolismphospholipase C [EC:3.1.4.3]ko00564K01114
Ether lipid metabolismphospholipase C [EC:3.1.4.3]ko00565K01114

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0008152metabolic process
GO:0016788hydrolase activity, acting on ester bonds

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.