PH01004140G0130's details annotation
1.Annotation
ICBR annotation: NAD dependent epimerase/dehydratase family protein, putative, expressed
Blast result AT1G08200 : 0.00E+00
Blast annotation: UDP-D-apiose/UDP-D-xylose synthase 2
2.Location
Scaffold: PH01004140
Strand: +
| Region | Start | End |
| gene | 100967 | 105624 |
| mRNA | 100967 | 105624 |
| exon | 100967 | 101791 |
| exon | 102261 | 102368 |
| exon | 103532 | 103876 |
| exon | 103980 | 104081 |
| exon | 104176 | 104268 |
| exon | 104344 | 104479 |
| exon | 104564 | 105624 |
| CDS | 101501 | 101791 |
| CDS | 102261 | 102368 |
| CDS | 103532 | 103876 |
| CDS | 103980 | 104081 |
| CDS | 104176 | 104268 |
| CDS | 104344 | 104479 |
| CDS | 104564 | 104679 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001504 | Amino_sugar_and_nucleotide_sugar_metabolism GT8 GlycosylTransferases DNA metabolic process, cellular metabolic process, Nucleotide_excision_repair Starch_and_sucrose_metabolism |
| coexpression network | CFinderM001716 | Amino_sugar_and_nucleotide_sugar_metabolism cellular metabolic process, GT8 GlycosylTransferases coenzyme binding, copper ion transport, copper-transporting_ATPase_activity Starch_and_sucrose_metabolism Ubiquitin_mediated_proteolysis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01370.20 | Epimerase | 25 | 295 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Amino sugar and nucleotide sugar metabolism | UDP-apiose/xylose synthase | ko00520 | K12449 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0044237 | cellular metabolic process |
| GO:0050662 | coenzyme binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.