PH01004295G0010's details annotation
1.Annotation
ICBR annotation: trehalose synthase, putative, expressed
Blast result AT4G17770 : 2.00E-151
Blast annotation: trehalose phosphatase/synthase 5
2.Location
Scaffold: PH01004295
Strand: -
| Region | Start | End |
| gene | 385 | 7164 |
| mRNA | 385 | 7164 |
| exon | 385 | 1504 |
| exon | 1562 | 7164 |
| CDS | 1130 | 1504 |
| CDS | 1562 | 2404 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000191 | TALE Transcription_Regulator(from PlantTFDB) HB-KNOX Transcription_Regulator(from iTAK) regulation of transcription, DNA-dependent, HB-BELL Transcription_Regulator(from iTAK) protein complex, nucleus, microtubule, AUX/IAA Transcription_Regulator(from iTAK) Phagosome selenium binding, sequence-specific DNA binding, structural constituent of cytoskeleton, sequence-specific DNA binding transcription factor activity, trehalose biosynthetic process, microtubule-based process, protein polymerization, |
| coexpression network | CFinderM000431 | Porphyrin_and_chlorophyll_metabolism C2C2-Dof Transcription_Regulator(from iTAK) HB-BELL Transcription_Regulator(from iTAK) TRAF Transcription_Regulator(from iTAK) Dof Transcription_Regulator(from PlantTFDB) TALE Transcription_Regulator(from PlantTFDB) oxygen-dependent protoporphyrinogen oxidase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00982.20 | Glyco_transf_20 | 1 | 71 |
| PF02358.15 | Trehalose_PPase | 121 | 365 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0005992 | trehalose biosynthetic process |
| GO:0008152 | metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.