PH01004323G0010's details annotation
1.Annotation
ICBR annotation: adaptor complexes medium subunit family domain containing protein, expressed
Blast result AT5G46630 : 1.00E-140
Blast annotation: Clathrin adaptor complexes medium subunit family protein
2.Location
Scaffold: PH01004323
Strand: +
| Region | Start | End |
| gene | 9147 | 13027 |
| mRNA | 9147 | 13027 |
| exon | 9147 | 9673 |
| exon | 10550 | 10598 |
| exon | 10712 | 10850 |
| exon | 11004 | 11120 |
| exon | 11215 | 11305 |
| exon | 11402 | 11544 |
| exon | 11814 | 11928 |
| exon | 12302 | 12346 |
| exon | 12425 | 13027 |
| CDS | 9587 | 9673 |
| CDS | 10550 | 10598 |
| CDS | 10712 | 10850 |
| CDS | 11004 | 11120 |
| CDS | 11215 | 11305 |
| CDS | 11402 | 11544 |
| CDS | 11814 | 11928 |
| CDS | 12302 | 12346 |
| CDS | 12425 | 12505 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000636 | RWP-RK Transcription_Regulator(from iTAK) Nin-like Transcription_Regulator(from PlantTFDB) GT31 GlycosylTransferases clathrin coat of coated pit, clathrin adaptor complex, ATP biosynthetic process, ATP_catabolic_process integral to membrane, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00928.20 | Adap_comp_sub | 30 | 288 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0006886 | intracellular protein transport |
| GO:0016192 | vesicle-mediated transport |
| GO:0030131 | clathrin adaptor complex |
| GO:0030132 | clathrin coat of coated pit |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.