PH01004589G0100's details annotation
1.Annotation
ICBR annotation: WD domain, G-beta repeat domain containing protein, expressed
Blast result AT4G00090 : 1.00E-136
Blast annotation: Transducin/WD40 repeat-like superfamily protein
2.Location
Scaffold: PH01004589
Strand: +
| Region | Start | End |
| gene | 68287 | 76144 |
| mRNA | 68287 | 76144 |
| exon | 68287 | 69670 |
| exon | 70209 | 70314 |
| exon | 70559 | 70619 |
| exon | 70722 | 71017 |
| exon | 71775 | 71914 |
| exon | 72384 | 72458 |
| exon | 72585 | 72633 |
| exon | 74162 | 74365 |
| exon | 74748 | 74792 |
| exon | 74977 | 75108 |
| exon | 75174 | 75244 |
| exon | 75679 | 76144 |
| CDS | 69407 | 69670 |
| CDS | 70209 | 70314 |
| CDS | 70559 | 70619 |
| CDS | 70722 | 71017 |
| CDS | 71775 | 71914 |
| CDS | 72384 | 72458 |
| CDS | 72585 | 72633 |
| CDS | 74162 | 74365 |
| CDS | 74748 | 74792 |
| CDS | 74977 | 75108 |
| CDS | 75174 | 75244 |
| CDS | 75679 | 75822 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001311 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis serine-type peptidase activity, CAMK_CDPK (from iTAK) histone modification, phospholipid biosynthetic process, aromatic amino acid family biosynthetic process, phosphatidylserine decarboxylase activity, 3-deoxy-7-phosphoheptulonate synthase activity, |
| coexpression network | CFinderM001481 | |
| coexpression network | CFinderM001482 | Protein_processing_in_endoplasmic_reticulum |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00400.31 | WD40 | 100 | 133 |
| PF00400.31 | WD40 | 313 | 328 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.