PH01004615G0050's details annotation
1.Annotation
ICBR annotation: hhH-GPD superfamily base excision DNA repair protein, expressed
Blast result AT5G04560 : 9.60E-43
Blast annotation: HhH-GPD base excision DNA repair family protein
2.Location
Scaffold: PH01004615
Strand: +
| Region | Start | End |
| gene | 25208 | 30888 |
| mRNA | 25208 | 30888 |
| exon | 25208 | 28593 |
| exon | 28905 | 28995 |
| exon | 29099 | 30650 |
| exon | 30796 | 30888 |
| CDS | 25842 | 28593 |
| CDS | 28905 | 28995 |
| CDS | 29099 | 30650 |
| CDS | 30796 | 30879 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000864 | mitochondrial inner membrane presequence translocase complex, P-P-bond-hydrolysis-driven protein transmembrane transporter activity, Endocytosis |
| coexpression network | CFinderM001239 | DNA repair, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0006281 | DNA repair |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.