PH01004663G0090's details annotation
1.Annotation
ICBR annotation: pumilio-family RNA binding repeat containing protein, expressed
Blast result AT2G29190 : 1.00E-76
Blast annotation: pumilio 2
2.Location
Scaffold: PH01004663
Strand: +
| Region | Start | End |
| gene | 73303 | 85673 |
| mRNA | 73303 | 85673 |
| exon | 73303 | 74728 |
| exon | 75456 | 75568 |
| exon | 76923 | 78010 |
| exon | 78090 | 78231 |
| exon | 78309 | 78416 |
| exon | 79371 | 79686 |
| exon | 80409 | 80493 |
| exon | 81265 | 81409 |
| exon | 81503 | 81613 |
| exon | 83171 | 83356 |
| exon | 83826 | 84000 |
| exon | 84628 | 85673 |
| CDS | 74536 | 74728 |
| CDS | 75456 | 75568 |
| CDS | 76923 | 78010 |
| CDS | 78090 | 78231 |
| CDS | 78309 | 78416 |
| CDS | 79371 | 79686 |
| CDS | 80409 | 80493 |
| CDS | 81265 | 81409 |
| CDS | 81503 | 81613 |
| CDS | 83171 | 83356 |
| CDS | 83826 | 84000 |
| CDS | 84628 | 84656 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001440 | Mismatch_repair nucleotide-excision repair, Mismatch_repair nuclear pore, nucleobase-containing compound metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00806.18 | PUF | 493 | 525 |
| PF00806.18 | PUF | 686 | 704 |
| PF00806.18 | PUF | 712 | 741 |
| PF00806.18 | PUF | 749 | 782 |
| PF00806.18 | PUF | 785 | 815 |
| PF00806.18 | PUF | 829 | 857 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003723 | RNA binding |
| GO:0005488 | binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.