PH01004678G0090's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT3G11150 : 4.40E-22
Blast annotation: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
2.Location
Scaffold: PH01004678
Strand: +
| Region | Start | End |
| gene | 53685 | 56272 |
| mRNA | 53685 | 56272 |
| exon | 53685 | 55060 |
| exon | 55545 | 56272 |
| CDS | 54224 | 55060 |
| CDS | 55545 | 55853 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000038 | bHLH Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM000042 | exocyst, Galactose_metabolism lipid biosynthetic process, exocytosis, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03171.19 | 2OG-FeII_Oxy | 254 | 313 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.