Annotation of co-expression genes

PH01004749G0020's details annotation

1.Annotation

ICBR annotation: NBS-LRR disease resistance protein, putative

Blast result AT3G14470 : 5.40E-65
Blast annotation: NB-ARC domain-containing disease resistance protein

2.Location

Scaffold: PH01004749
Strand: -

RegionStartEnd
gene2987633554
mRNA2987633554
exon2987630713
exon3088633554
CDS3015030713
CDS3088633135

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000495SNF2 Transcription_Regulator(from iTAK)
proteasomal ubiquitin-dependent protein catabolic process,
nucleotide-excision repair,
ribosome biogenesis,
eukaryotic translation initiation factor 3 complex,
nucleolus,
helicase activity,
coexpression networkCFinderM001272

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00931.21NB-ARC173447
PF13855.5LRR_8533591

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0006952defense response
GO:0043531ADP binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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