PH01004849G0060's details annotation
1.Annotation
ICBR annotation: C2 domain containing protein, putative, expressed
Blast result AT5G55530 : 4.60E-94
Blast annotation: Calcium-dependent lipid-binding (CaLB domain) family protein
2.Location
Scaffold: PH01004849
Strand: -
| Region | Start | End |
| gene | 37032 | 40693 |
| mRNA | 37032 | 40693 |
| exon | 37032 | 40693 |
| CDS | 37520 | 38728 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001703 | Endocytosis regulation of ARF GTPase activity, ARF GTPase activator activity, |
| coexpression network | CFinderM001790 | regulation of translational initiation, ribosome binding, eukaryotic translation initiation factor 3 complex, translation initiation factor activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00168.29 | C2 | 40 | 134 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.