PH01004879G0040's details annotation
1.Annotation
ICBR annotation: glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed
Blast result AT5G48300 : 0.00E+00
Blast annotation: ADP glucose pyrophosphorylase 1
2.Location
Scaffold: PH01004879
Strand: -
| Region | Start | End |
| gene | 20064 | 27729 |
| mRNA | 20064 | 27729 |
| exon | 20064 | 20518 |
| exon | 21262 | 21381 |
| exon | 21463 | 21561 |
| exon | 21760 | 21871 |
| exon | 21983 | 22086 |
| exon | 22330 | 22509 |
| exon | 22636 | 22905 |
| exon | 23608 | 23658 |
| exon | 24814 | 25110 |
| exon | 26994 | 27729 |
| CDS | 20402 | 20518 |
| CDS | 21262 | 21381 |
| CDS | 21463 | 21561 |
| CDS | 21760 | 21871 |
| CDS | 21983 | 22086 |
| CDS | 22330 | 22509 |
| CDS | 22636 | 22905 |
| CDS | 23608 | 23658 |
| CDS | 24814 | 25110 |
| CDS | 26994 | 27134 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000230 | biosynthetic process, glycogen biosynthetic process, RLK-Pelle_LRR-XI-1 (from iTAK) Starch_and_sucrose_metabolism Amino_sugar_and_nucleotide_sugar_metabolism |
| coexpression network | CFinderM000289 | RLK-Pelle_LRR-XI-1 (from iTAK) glycogen biosynthetic process, Starch_and_sucrose_metabolism Amino_sugar_and_nucleotide_sugar_metabolism |
| coexpression network | CFinderM000483 | GRAS Transcription_Regulator(from PlantTFDB) TKL-Pl-4 (from iTAK) Arachidonic_acid_metabolism glycogen biosynthetic process, amino_acid_transmembrane_transport |
| coexpression network | CFinderM000618 | TKL-Pl-4 (from iTAK) Valine,_leucine_and_isoleucine_degradation |
| coexpression network | CFinderM000850 | RLK-Pelle_DLSV (from iTAK) |
| coexpression network | CFinderM001237 | |
| coexpression network | CFinderM001328 | GT32 GlycosylTransferases Golgi stack, CMGC_SRPK (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00483.22 | NTP_transferase | 51 | 341 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Starch and sucrose metabolism | glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] | ko00500 | K00975 |
| Amino sugar and nucleotide sugar metabolism | glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] | ko00520 | K00975 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005978 | glycogen biosynthetic process |
| GO:0009058 | biosynthetic process |
| GO:0016740 | transferase activity |
| GO:0016779 | nucleotidyltransferase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.