PH01004926G0040's details annotation
1.Annotation
ICBR annotation: PPR repeat domain containing protein, putative, expressed
Blast result AT3G15200 : 6.20E-39
Blast annotation: Tetratricopeptide repeat (TPR)-like superfamily protein
2.Location
Scaffold: PH01004926
Strand: +
| Region | Start | End |
| gene | 16579 | 26437 |
| mRNA | 16579 | 26437 |
| exon | 16579 | 17296 |
| exon | 17554 | 17718 |
| exon | 17754 | 18366 |
| exon | 18811 | 18869 |
| exon | 18921 | 19109 |
| exon | 19659 | 19742 |
| exon | 20437 | 20613 |
| exon | 20840 | 20910 |
| exon | 21233 | 21277 |
| exon | 21320 | 21820 |
| exon | 22157 | 22501 |
| exon | 22822 | 22888 |
| exon | 23423 | 23689 |
| exon | 24286 | 26437 |
| CDS | 17194 | 17296 |
| CDS | 17554 | 17718 |
| CDS | 17754 | 18366 |
| CDS | 18811 | 18869 |
| CDS | 18921 | 19109 |
| CDS | 19659 | 19742 |
| CDS | 20437 | 20613 |
| CDS | 20840 | 20910 |
| CDS | 21233 | 21277 |
| CDS | 21320 | 21820 |
| CDS | 22157 | 22501 |
| CDS | 22822 | 22888 |
| CDS | 23423 | 23689 |
| CDS | 24286 | 24965 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000646 | ion transport, Ubiquitin_mediated_proteolysis membrane, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01535.19 | PPR | 258 | 284 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.