PH01004961G0020's details annotation
1.Annotation
ICBR annotation: lipase class 3 family protein, putative, expressed
Blast result AT4G10955 : 5.70E-81
Blast annotation: alpha/beta-Hydrolases superfamily protein
2.Location
Scaffold: PH01004961
Strand: +
| Region | Start | End |
| gene | 6517 | 8408 |
| mRNA | 6517 | 8408 |
| exon | 6517 | 8408 |
| CDS | 6873 | 7685 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000372 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis L-phenylalanine biosynthetic process, regulation of ARF GTPase activity, Endocytosis |
| coexpression network | CFinderM001251 | NAK (from iTAK) magnesium_ion_transport magnesium_ion_transmembrane_transporter_activity triglyceride lipase activity, lipid metabolic process, glycopeptide_alpha-N-acetylgalactosaminidase_activity membrane, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01764.24 | Lipase_3 | 28 | 112 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004806 | triglyceride lipase activity |
| GO:0006629 | lipid metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.