Annotation of co-expression genes

PH01005033G0090's details annotation

1.Annotation

ICBR annotation: ZOS3-17 - C2H2 zinc finger protein, expressed

Blast result - : -
Blast annotation: -

2.Location

Scaffold: PH01005033
Strand: +

RegionStartEnd
gene7071173898
mRNA7071173898
exon7071170845
exon7198872053
exon7309273898
CDS7080070845
CDS7198872053
CDS7309273516

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000400hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds,
nitrogen compound metabolic process,
coexpression networkCFinderM000830cytoskeleton,
proton-transporting ATP synthase complex, catalytic core F(1),
phagocytosis,
branched chain family amino acid biosynthetic process,
signal peptide processing,
phosphoacetylglucosamine mutase activity,
Other_glycan_degradation
coexpression networkCFinderM001349hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds,
nitrogen compound metabolic process,
cation-transporting_ATPase_activity
cation transport,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
nullnullnullnull

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
nullnull

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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