PH01005035G0020's details annotation
1.Annotation
ICBR annotation: mago nashi, putative, expressed
Blast result AT1G02140 : 1.20E-61
Blast annotation: mago nashi family protein
2.Location
Scaffold: PH01005035
Strand: -
| Region | Start | End |
| gene | 8250 | 10832 |
| mRNA | 8250 | 10832 |
| exon | 8250 | 8839 |
| exon | 9986 | 10162 |
| exon | 10269 | 10832 |
| CDS | 8675 | 8839 |
| CDS | 9986 | 10162 |
| CDS | 10269 | 10517 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000073 | BES1 Transcription_Regulator(from PlantTFDB) large ribosomal subunit, C2C2-GATA Transcription_Regulator(from iTAK) GATA Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM000074 | Ribosome translation, structural constituent of ribosome, intracellular, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02792.13 | Mago_nashi | 20 | 142 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005634 | nucleus |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.