PH01005277G0030's details annotation
1.Annotation
ICBR annotation: glycosyl hydrolase family 3 protein, putative, expressed
Blast result AT1G02640 : 5.00E-162
Blast annotation: beta-xylosidase 2
2.Location
Scaffold: PH01005277
Strand: +
| Region | Start | End |
| gene | 22095 | 27480 |
| mRNA | 22095 | 27480 |
| exon | 22095 | 22546 |
| exon | 25082 | 25224 |
| exon | 25465 | 26450 |
| exon | 26597 | 27480 |
| CDS | 22160 | 22546 |
| CDS | 25082 | 25224 |
| CDS | 25465 | 26450 |
| CDS | 26597 | 27213 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000074 | Ribosome translation, structural constituent of ribosome, intracellular, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Glycoside_Hydrolases | GH3 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00933.20 | Glyco_hydro_3 | 105 | 177 |
| PF01915.21 | Glyco_hydro_3_C | 325 | 559 |
| PF14310.5 | Fn3-like | 627 | 696 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.