PH01005364G0080's details annotation
1.Annotation
ICBR annotation: pectinacetylesterase domain containing protein, expressed
Blast result AT3G05910 : 5.00E-123
Blast annotation: Pectinacetylesterase family protein
2.Location
Scaffold: PH01005364
Strand: +
| Region | Start | End |
| gene | 52600 | 57167 |
| mRNA | 52600 | 57167 |
| exon | 52600 | 53424 |
| exon | 54123 | 54205 |
| exon | 54338 | 54467 |
| exon | 54607 | 54680 |
| exon | 54992 | 55078 |
| exon | 55164 | 55288 |
| exon | 55466 | 55526 |
| exon | 55854 | 55931 |
| exon | 56028 | 56082 |
| exon | 56271 | 56416 |
| exon | 56651 | 57167 |
| CDS | 53253 | 53424 |
| CDS | 54123 | 54205 |
| CDS | 54338 | 54467 |
| CDS | 54607 | 54680 |
| CDS | 54992 | 55078 |
| CDS | 55164 | 55288 |
| CDS | 55466 | 55526 |
| CDS | 55854 | 55931 |
| CDS | 56028 | 56082 |
| CDS | 56271 | 56416 |
| CDS | 56651 | 56731 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000118 |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03283.12 | PAE | 40 | 337 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.