PH01005629G0090's details annotation
1.Annotation
ICBR annotation: FHA domain containing protein, putative, expressed
Blast result AT1G34355 : 1.40E-27
Blast annotation: forkhead-associated (FHA) domain-containing protein
2.Location
Scaffold: PH01005629
Strand: -
| Region | Start | End |
| gene | 53135 | 57266 |
| mRNA | 53135 | 57266 |
| exon | 53135 | 53766 |
| exon | 53851 | 54189 |
| exon | 54830 | 54980 |
| exon | 55084 | 55652 |
| exon | 55682 | 56062 |
| exon | 56423 | 57266 |
| CDS | 53438 | 53766 |
| CDS | 53851 | 54189 |
| CDS | 54830 | 54980 |
| CDS | 55084 | 55652 |
| CDS | 55682 | 56062 |
| CDS | 56423 | 56744 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000939 | microtubule-based movement, microtubule associated complex, Phenylalanine,_tyrosine_and_tryptophan_biosynthesis microtubule motor activity, aromatic amino acid family biosynthetic process, 3-dehydroquinate synthase activity, minus-end-directed_microtubule_motor_activity RNA_degradation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13638.5 | PIN_4 | 442 | 582 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.