PH01005712G0040's details annotation
1.Annotation
ICBR annotation: L-ascorbate oxidase homolog precursor, putative, expressed
Blast result AT5G66920 : 0.00E+00
Blast annotation: SKU5 similar 17
2.Location
Scaffold: PH01005712
Strand: -
| Region | Start | End |
| gene | 28105 | 30731 |
| mRNA | 28105 | 30731 |
| exon | 28105 | 28367 |
| exon | 28486 | 28564 |
| exon | 28674 | 29385 |
| exon | 29503 | 29870 |
| exon | 29958 | 30067 |
| exon | 30512 | 30731 |
| CDS | 28164 | 28367 |
| CDS | 28486 | 28564 |
| CDS | 28674 | 29385 |
| CDS | 29503 | 29870 |
| CDS | 29958 | 30067 |
| CDS | 30512 | 30667 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000178 | cellular glucan metabolic process, xyloglucan:xyloglucosyl transferase activity, cell wall, apoplast, GH16 Glycoside_Hydrolases WRKY Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07732.14 | Cu-oxidase_3 | 39 | 152 |
| PF00394.21 | Cu-oxidase | 165 | 299 |
| PF07731.13 | Cu-oxidase_2 | 383 | 519 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005507 | copper ion binding |
| GO:0016491 | oxidoreductase activity |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.