PH01006080G0030's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G14615 : 2.40E-24
Blast annotation: -
2.Location
Scaffold: PH01006080
Strand: +
| Region | Start | End |
| gene | 25632 | 27989 |
| mRNA | 25632 | 27989 |
| exon | 25632 | 26850 |
| exon | 27764 | 27989 |
| CDS | 26722 | 26850 |
| CDS | 27764 | 27862 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001374 | Others Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001376 | cis-Golgi network, cell communication, phosphatidylinositol binding, |
| coexpression network | CFinderM001461 | HMG Transcription_Regulator(from iTAK) base-excision repair, 4 iron, 4 sulfur cluster binding, endonuclease activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF09803.8 | Pet100 | 11 | 74 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.