Annotation of co-expression genes

PH01006971G0010's details annotation

1.Annotation

ICBR annotation: CAMK_CAMK_like.33 - CAMK includes calcium/calmodulin depedent protein kinases, expressed

Blast result AT4G04720 : 1.80E-78
Blast annotation: calcium-dependent protein kinase 21

2.Location

Scaffold: PH01006971
Strand: +

RegionStartEnd
gene362347
mRNA362347
exon362347
CDS12702022

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001163CAMK_CDPK (from iTAK)
guanyl-nucleotide exchange factor activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00069.24Pkinase85241

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.