Gene details

Annotation of co-expression genes

PH01007419G0040's details annotation

1.Annotation

ICBR annotation: squalene synthetase, putative, expressed

Blast result AT4G34640 : 3.40E-46
Blast annotation: squalene synthase 1

2.Location

Scaffold: PH01007419
Strand: -

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM000331
coexpression network	CFinderM001736	Oxidative_phosphorylation proton-transporting V-type ATPase, V1 domain, mitochondrial proton-transporting ATP synthase complex, coupling factor F(o), proton-transporting two-sector ATPase complex, catalytic domain, clathrin adaptor complex, Phagosome ATP metabolic process, proton transport, ATP synthesis coupled proton transport, ATP hydrolysis coupled proton transport, hydrogen ion transmembrane transporter activity, transferase activity, transferring alkyl or aryl (other than methyl) groups, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances,

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

Pfam Accession	Pfam Annotation	Alignment Start	Alignment Start
PF00494.18	SQS_PSY	7	90

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
null	null	null	null

10.Gene Ontology

GO Accession	GO Annotation
GO:0009058	biosynthetic process
GO:0016740	transferase activity
GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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