Annotation of co-expression genes

PH01010104G0010's details annotation

1.Annotation

ICBR annotation: cytochrome P450, putative, expressed

Blast result AT5G25900 : 1.70E-49
Blast annotation: GA requiring 3

2.Location

Scaffold: PH01010104
Strand: -

RegionStartEnd
gene97873
mRNA97873
exon97255
exon332586
exon737873
CDS97255
CDS332586
CDS737850

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000323Diterpenoid_biosynthesis
Lysine_degradation
SET Transcription_Regulator(from iTAK)
histone_methylation
electron carrier activity,
heme binding,
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen,
iron ion binding,
histone_lysine_methylation
histone_binding
histone-lysine N-methyltransferase activity,
oxidation-reduction process,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00067.21p45047176

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Diterpenoid biosynthesisent-kaurene oxidase [EC:1.14.13.78]ko00904K04122

10.Gene Ontology

GO AccessionGO Annotation
GO:0005506iron ion binding
GO:0009055electron carrier activity
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037heme binding
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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