PH01015374G0010's details annotation
1.Annotation
ICBR annotation: receptor-like protein kinase 5 precursor, putative, expressed
Blast result AT5G25930 : 2.00E-97
Blast annotation: Protein kinase family protein with leucine-rich repeat domain
2.Location
Scaffold: PH01015374
Strand: -
| Region | Start | End |
| gene | 1093 | 3089 |
| mRNA | 1093 | 3089 |
| exon | 1093 | 3089 |
| CDS | 1584 | 3089 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000160 | RLK-Pelle_LRK10L-2 (from iTAK) SNARE_interactions_in_vesicular_transport transport, cell wall macromolecule catabolic process, chitin catabolic process, transmembrane transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08263.11 | LRRNT_2 | 35 | 71 |
| PF13855.5 | LRR_8 | 149 | 207 |
| PF13855.5 | LRR_8 | 296 | 355 |
| PF00560.32 | LRR_1 | 464 | 482 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.