Annotation of co-expression genes

PH01162987G0010's details annotation

1.Annotation

ICBR annotation: POLGAMMA2, putative, expressed

Blast result AT1G50840 : 2.80E-85
Blast annotation: polymerase gamma 2

2.Location

Scaffold: PH01162987
Strand: -

RegionStartEnd
gene11678
mRNA11678
exon11678
CDS11678

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000379arginyl-tRNA aminoacylation,
arginine-tRNA ligase activity,
tRNA processing,
tRNA (guanine-N2-)-methyltransferase activity,
tRNA aminoacylation for protein translation,
double-stranded RNA binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
nullnullnullnull

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Purine metabolismDNA polymerase I [EC:2.7.7.7]ko00230K02335
Pyrimidine metabolismDNA polymerase I [EC:2.7.7.7]ko00240K02335
DNA replicationDNA polymerase I [EC:2.7.7.7]ko03030K02335
Base excision repairDNA polymerase I [EC:2.7.7.7]ko03410K02335
Nucleotide excision repairDNA polymerase I [EC:2.7.7.7]ko03420K02335
Homologous recombinationDNA polymerase I [EC:2.7.7.7]ko03440K02335

10.Gene Ontology

GO AccessionGO Annotation
GO:0003676nucleic acid binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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