CFinderM001029's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
translation,0.000186596GO:0006412
structural constituent of ribosome,0.000498721GO:0003735
intracellular,0.001236168GO:0005622
Ribosome0.005138578KEGG
large ribosomal subunit,0.011317896GO:0015934
thiolester_hydrolase_activity0.016526906GO:0016790
rRNA binding,0.018351753GO:0019843
RNA_polymerase0.028461046KEGG
Fatty_acid_biosynthesis0.028461046KEGG
DNA-directed RNA polymerase activity,0.035696555GO:0003899
fatty acid biosynthetic process,0.037838026GO:0006633
transcription, DNA-dependent,0.037838026GO:0006351

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000209G0270-AT3G52040 (3.80E-25)
PH01000315G0750RNApolymerase 14 kDa subunitAT2G29540 (3.90E-31)
PH01000838G0360fatA acyl-ACP thioesteraseAT3G25110 (4.00E-132)
PH01001879G0280Ribosomal protein L1p/L10e familyAT1G08360 (3.10E-85)
PH01002255G0400Zinc-binding ribosomal protein family proteinAT4G14320 (3.70E-57)
PH01006214G0030Ribosomal protein L20AT1G16740 (7.40E-55)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000433Ribosome_biogenesis_in_eukaryotes
ATP-dependent helicase activity,
threonine-tRNA ligase activity,
helicase activity,
details
CFinderM001018mitochondrial intermembrane space,
CMGC_CK2 (from iTAK)
mitochondrial electron transport, ubiquinol to cytochrome c,
copper ion transport,
ubiquinol-cytochrome-c reductase activity,
copper chaperone activity,
RNA-dependent DNA replication,
Oxidative_phosphorylation
Ribosome_biogenesis_in_eukaryotes
details
CFinderM001030protein import into mitochondrial inner membrane,
RLK-Pelle_L-LEC (from iTAK)
protein methylation,
details
CFinderM001031intracellular,
translation,
structural constituent of ribosome,
protein import into mitochondrial inner membrane,
Ribosome
RLK-Pelle_L-LEC (from iTAK)
large ribosomal subunit,
ribosome biogenesis,
details

4.Expression profilings