|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | 6-phosphofructokinase complex, | 0.005675248 | GO:0005945 | | fructose_6-phosphate_metabolic_process | 0.011837853 | GO:0006002 | | response to heat, | 0.011837853 | GO:0009408 | | diphosphate-fructose-6-phosphate 1-phosphotransferase activity, | 0.028529472 | GO:0047334 | | heat shock protein binding, | 0.041132034 | GO:0031072 | | 6-phosphofructokinase activity, | 0.041132034 | GO:0003872 | | phospholipid binding, | 0.049758353 | GO:0005543 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000159G0900 | - | AT4G36980 (3.40E-28) | | PH01000343G0770 | DNAJ homologue 3 | AT3G44110 (1.00E-159) | | PH01000419G0820 | Phosphofructokinase family protein | AT1G12000 (0.00E+00) | | PH01000424G0060 | Integral membrane HRF1 family protein | AT1G30890 (9.00E-106) | | PH01001215G0450 | Tetratricopeptide repeat (TPR)-like superfamily protein | AT5G41950 (3.00E-154) | | PH01002441G0040 | Sec14p-like phosphatidylinositol transfer family protein | AT4G08690 (4.80E-86) | | PH01002719G0020 | protein phosphatase 2A-4 | AT3G58500 (2.00E-175) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000962 | 6-phosphofructokinase complex,
6-phosphofructokinase activity,
glycolysis,
translation_initiation_factor_binding
diphosphate-fructose-6-phosphate 1-phosphotransferase activity,
eukaryotic translation initiation factor 3 complex,
fructose_6-phosphate_metabolic_process
translational initiation,
ATP synthesis coupled proton transport,
hydrogen ion transporting ATP synthase activity, rotational mechanism,
Oxidative_phosphorylation
RNA_transport
| details | | CFinderM001173 | HB-other Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001397 | GT4 GlycosylTransferases
| details | | CFinderM001419 | nucleocytoplasmic transport,
GTP_catabolic_process
small GTPase mediated signal transduction,
protein transport,
signal transduction,
intracellular protein transport,
cellular carbohydrate metabolic process,
malate metabolic process,
GTPase activity,
GTP binding,
malate dehydrogenase activity,
L-malate dehydrogenase activity,
intracellular,
Pyruvate_metabolism
Carbon_fixation_in_photosynthetic_organisms
Glyoxylate_and_dicarboxylate_metabolism
Citrate_cycle_(TCA_cycle)
membrane,
| details | | CFinderM001498 | mTERF Transcription_Regulator(from iTAK)
| details | | CFinderM001723 | Proteasome
proteolysis involved in cellular protein catabolic process,
protein catabolic process,
proteasome core complex,
mRNA_surveillance_pathway
| details | | CFinderM001748 | methionine metabolic process,
methylenetetrahydrofolate reductase (NADPH) activity,
One_carbon_pool_by_folate
Carbon_fixation_pathways_in_prokaryotes
Protein_export
| details | | CFinderM001806 | PHD Transcription_Regulator(from iTAK)
Nitrogen_metabolism
Oxidative_phosphorylation
| details | | CFinderM001842 | ATP synthesis coupled proton transport,
Propanoate_metabolism
Carbon_fixation_pathways_in_prokaryotes
hydrogen ion transporting ATP synthase activity, rotational mechanism,
phospholipid binding,
| details |
4.Expression profilings |
