Gene detail

CRO_T000763's detailed information

Annotation (DRYAD)

Gene ID	Functional Annotation
CRO_T000763	vacuolar membrane ATPase

Blast top3 hits

Species	Gene ID	E-value	Annotation
Arabidopsis thaliana	AT3G01390	1.00E-31	VMA10\|vacuolar membrane ATPase 10
Arabidopsis thaliana	AT4G23710	2.00E-22	VAG2\|vacuolar ATP synthase subunit G2
Arabidopsis thaliana	AT4G25950	6.00E-15	VATG3\|vacuolar ATP synthase G3

Network

Network Category	Global Network	Tissue Preferential Network	Treat Response Network
Coexpression Positive	Top300 PCC Genelist	Top300 PCC Genelist	Top300 PCC Genelist
Coexpression Negative	Top300 PCC Genelist	Top300 PCC Genelist	Top300 PCC Genelist
PPI Relationship	Null
miRNA-Target Relationship	Null

Functional module

Module ID	Function Annotation	Category
CFinderADM001869	adenosine ribonucleotides de novo biosynthesis vacuolar proton-transporting V-type ATPase complex H3 histone acetyltransferase activity histone acetyltransferase complex histone H3 acetylation root morphogenesis Notch signaling pathway hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances Transcription_related, Transcription regulator: GNAT flower development response to light stimulus proton transport mRNA surveillance pathway RNA transport Oxidative phosphorylation transmembrane transport RNA binding nucleotide binding DNA binding cytoplasm	global network

Location

Gene	Assembly	Scaffold	Start	End	Strand
CRO_T000763	scaffolds.min_1000bp	scaffold_3068375	42078	45041	+

Gene detail image

more details in UCSC

Sequences

Genome:
CRO_T000763
ATGTTGCTAAGGATGTGGGGATTCCTAAGTATTCCTGTACAAACTGGAAAATGTATGACAATATTTGCATGTACTTCCCCTTCCTTTTAGACCTCGTCAGTTGGTTGTATAGTATTTGGGAATTACAAGCTTAGCATTCTAGGGACTCTTATAGGTATAATAGTTCTGTTGTTGACCGGATGCTTATAGTTCAGTCATTAATTTCTTTTTTCAGTTCTCTTTTTGGCTTTTCCTGCCAAGTGTTTTTACTGTGATGATTCATATAAGAATGTGCTTTTGTCAGTTACTCCCCTGGTTATGTTTTAGTTTCAATTTAGGACAGGGCACGTAGATTAAGAAAGTATCAACTGTGATGGATATATAGCTTAAATTGACTGAAATAACCTTACTTAAAGGCTCTAGATCTTCTAGTACATCCTTTAGTGTGTTGTCTTGTATGCCAATGTAATTGCCCCACATGTAATAACATCATTGGACCAAGTAAATTTGAGGATGCTTGGACTAAGCACATCATTCTATATGGAGCAATTCAATTGGTTGACAGTATACTAGAGAATGTATTAGAAGATCAATGGCCTTATTTTACAAGAGTAGTAATGTTCTCCCTTCCTAGTAATTTCCTTAATCTCTCTCATAAAAAGTGGTCCAGTGGTTAAATATTCAACATTTGGGTTTATGCATAAATTCAATATGTTAGTTTGAAGCTTTTAATATTGGACTGATATCTAAGATATCTATCTTGAGATCTGTACAACTATATATAATTCAATTTAAAGGAGATGATAAGGTTAAATTGGAATAGAAGTAAAAATTACACTATTGATTTTCCAGATTGACGACTTAGTTGTATCAACAATAATTGAAATCTTTGACCCCTAACATATAATGGAGGGAGTAGAGGGAGTATTTTGTTGGAGACGCTAATGATATTTATAACTATACTCAAGTTTCAAGCTAAATGAAATACAATAGCTACTGGTTAGAGGAGAGGATTATGTCTGCTTAATGCCATGACATTTGAAATGTATACTTATCACTTGAGCAAATTTTATTTCTTTGTGCTCAGAAACATATTGTGGTTGCATTTTGATTTTGAAACTTACATTGTATATGTTGTCACCTAGATCAAGTCTTAGAATTGTTTATCTTTGGAGGAAATTTGTTTTCTTCACAAGCGTCATTGTGGTCTCATCATACTTTTCATTCTTGATGCAGCTGCTGTAATTGTTCTCATGGAATCAAGCAGAGGCCAAAATGGAATTCAAGCCTTATTAGCTGCGGAACAGGAAGCACAACACATTGTCAATGCTGCTAGATCAGGTAATTCTTTTCGTACATTTAAATTTTAATTTTGTTGGCTCCTTTTCTCTCGGAAAAATGCACCACGTTGATTTATTGACTAGTCGTAGGCTTTGTTTTTCTTCACATCTGCCCAAGGTTATCACTTTTCAGAAGTATGAGTTCCACAGGTTGCTTGTAGAAATTGAGATTGGCGAGATTTGTTTATTTTTCATAATTCCCAAATTTCAAATTCTTTAAATTTAAAATGATAAGCAATTTCAAGAGTCACTTAAAGGTAATTGAGATTATGCCCAAATGAGAGGACAATTTGCTGAAAGATATAATTTTTCCAAAATAAAAGTGTTTGCGGATATGTTAAGATTTATAGATTTTTCTTCAAGAACAAATGTCAGTAAGAATAAAGATAACATACAACTCCAGAATATTAAAGTTATAAATGTTCTGCAGAATAATGATAGATTGTTAGTGCCAAAGATCACTATTAACATCATGGATATACTCCAGCTTTGTGGGCAGAATGTCGTAGTTTTAAGCTTCCAAGCAAAATGCTGATGGACTACATGCTAACATTACCAATTCAGTATTCTGTTATTAGCAGTCTTTACCTGTAAATGCACATCTATTGCCTGTTTTGAACCATCATACTTAACATTATTTTGGCATTTGTTTTCTGCAGCAAAACAGGCAAGACTGAGGCAGGCCAAAGAAGAAGCTGAGAAGGAAATCGCTGAATTCCGTGCACAAATGGAAGCTGATTTTCAGAGGAAACTTGCAGAGGTAAAATCTCTGAAAAGAATATACAGGACACAGAAGTATTTGGAAAATTATGGAAATCAATATCGTATGAGAATTGCTGCTTTGTGTCTAAGGGGCACAAAGTTCTTAACTGTTTATGTTCTATATGGACTTGGACACATCTATCTGGTTATCATTTTTGTATACCTGTATCACTCTGTATTTAAAATAAGTCAAAGAAGAAGTGTGATAGTGTATTTATACATTTTTGCCTGCATGTGAGTTTGCATGTCTCGTTGAATTTATTCTCTATTCCTTTTTGATCAACCTGTGTACCTCAAGTATTTTACTTTCGGAATTCATTTTCTAGTTATAGAGTCCATTCTTCTTTTGTGTTATCATCATATGATCAGTATCCTGGTATAATTTAATTATCTTAATGCCTGGGGACACTTACTGCCGATTTATTTTCTTTCGACTTTGGTATGTTTGTCTTTCTTGTGAAAATGTTATTTAAGTTGTGTATGTTTCTCATGTATATGCTAACAAGATGAAATTTCCGTGTTGATAGACCAGCGGAGATTCGGGTGCTAATGTTAAAAGACTTGAAAAAGAAACCGAGGGTAAGATTGGTCACCTTAAGACAGAGGCTTCAAGAATCTCCTCAGATGTTGTTCAGATGCTTATGAGGCACGTTACTACCGTAAAGAATTAAGATGTTGGAAGCTGACGGACGACGTTACATGTCCATGATTGTGGTTGTTCCTCTGTTTTCTTGTCATGAATGTAGTAATTTATAATGTGTAATTGATGATTGGTTGCCTTTCTATGGAATAAGAGTAAAAGGGCATTGGCATGTCCTGTTTTGTATCAGTATTTTTTACTTTCTAAGGAGAGAAATGAAACACTCAAAAAAATTCTCGGGTT
CDS:
CRO_T000763
ATGTTGCTAAGGATGTGGGGATTCCTAAGTATTCCTGTACAAACTGGAAAATCTGCTGTAATTGTTCTCATGGAATCAAGCAGAGGCCAAAATGGAATTCAAGCCTTATTAGCTGCGGAACAGGAAGCACAACACATTGTCAATGCTGCTAGATCAGCAAAACAGGCAAGACTGAGGCAGGCCAAAGAAGAAGCTGAGAAGGAAATCGCTGAATTCCGTGCACAAATGGAAGCTGATTTTCAGAGGAAACTTGCAGAGACCAGCGGAGATTCGGGTGCTAATGTTAAAAGACTTGAAAAAGAAACCGAGGGTAAGATTGGTCACCTTAAGACAGAGGCTTCAAGAATCTCCTCAGATGTTGTTCAGATGCTTATGAGGCACGTTACTACCGTAAAGAATTAA
Transcript:
CRO_T000763
ATGTTGCTAAGGATGTGGGGATTCCTAAGTATTCCTGTACAAACTGGAAAATCTGCTGTAATTGTTCTCATGGAATCAAGCAGAGGCCAAAATGGAATTCAAGCCTTATTAGCTGCGGAACAGGAAGCACAACACATTGTCAATGCTGCTAGATCAGCAAAACAGGCAAGACTGAGGCAGGCCAAAGAAGAAGCTGAGAAGGAAATCGCTGAATTCCGTGCACAAATGGAAGCTGATTTTCAGAGGAAACTTGCAGAGACCAGCGGAGATTCGGGTGCTAATGTTAAAAGACTTGAAAAAGAAACCGAGGGTAAGATTGGTCACCTTAAGACAGAGGCTTCAAGAATCTCCTCAGATGTTGTTCAGATGCTTATGAGGCACGTTACTACCGTAAAGAATTAAGATGTTGGAAGCTGACGGACGACGTTACATGTCCATGATTGTGGTTGTTCCTCTGTTTTCTTGTCATGAATGTAGTAATTTATAATGTGTAATTGATGATTGGTTGCCTTTCTATGGAATAAGAGTAAAAGGGCATTGGCATGTCCTGTTTTGTATCAGTATTTTTTACTTTCTAAGGAGAGAAATGAAACACTCAAAAAAATTCTCGGGTT
Protein:
CRO_T000763
MLLRMWGFLSIPVQTGKSAVIVLMESSRGQNGIQALLAAEQEAQHIVNAARSAKQARLRQAKEEAEKEIAEFRAQMEADFQRKLAETSGDSGANVKRLEKETEGKIGHLKTEASRISSDVVQMLMRHVTTVKN*

Genome:

CRO_T000763

ATGTTGCTAAGGATGTGGGGATTCCTAAGTATTCCTGTACAAACTGGAAAATGTATGACAATATTTGCATGTACTTCCCCTTCCTTTTAGACCTCGTCAGTTGGTTGTATAGTATTTGGGAATTACAAGCTTAGCATTCTAGGGACTCTTATAGGTATAATAGTTCTGTTGTTGACCGGATGCTTATAGTTCAGTCATTAATTTCTTTTTTCAGTTCTCTTTTTGGCTTTTCCTGCCAAGTGTTTTTACTGTGATGATTCATATAAGAATGTGCTTTTGTCAGTTACTCCCCTGGTTATGTTTTAGTTTCAATTTAGGACAGGGCACGTAGATTAAGAAAGTATCAACTGTGATGGATATATAGCTTAAATTGACTGAAATAACCTTACTTAAAGGCTCTAGATCTTCTAGTACATCCTTTAGTGTGTTGTCTTGTATGCCAATGTAATTGCCCCACATGTAATAACATCATTGGACCAAGTAAATTTGAGGATGCTTGGACTAAGCACATCATTCTATATGGAGCAATTCAATTGGTTGACAGTATACTAGAGAATGTATTAGAAGATCAATGGCCTTATTTTACAAGAGTAGTAATGTTCTCCCTTCCTAGTAATTTCCTTAATCTCTCTCATAAAAAGTGGTCCAGTGGTTAAATATTCAACATTTGGGTTTATGCATAAATTCAATATGTTAGTTTGAAGCTTTTAATATTGGACTGATATCTAAGATATCTATCTTGAGATCTGTACAACTATATATAATTCAATTTAAAGGAGATGATAAGGTTAAATTGGAATAGAAGTAAAAATTACACTATTGATTTTCCAGATTGACGACTTAGTTGTATCAACAATAATTGAAATCTTTGACCCCTAACATATAATGGAGGGAGTAGAGGGAGTATTTTGTTGGAGACGCTAATGATATTTATAACTATACTCAAGTTTCAAGCTAAATGAAATACAATAGCTACTGGTTAGAGGAGAGGATTATGTCTGCTTAATGCCATGACATTTGAAATGTATACTTATCACTTGAGCAAATTTTATTTCTTTGTGCTCAGAAACATATTGTGGTTGCATTTTGATTTTGAAACTTACATTGTATATGTTGTCACCTAGATCAAGTCTTAGAATTGTTTATCTTTGGAGGAAATTTGTTTTCTTCACAAGCGTCATTGTGGTCTCATCATACTTTTCATTCTTGATGCAGCTGCTGTAATTGTTCTCATGGAATCAAGCAGAGGCCAAAATGGAATTCAAGCCTTATTAGCTGCGGAACAGGAAGCACAACACATTGTCAATGCTGCTAGATCAGGTAATTCTTTTCGTACATTTAAATTTTAATTTTGTTGGCTCCTTTTCTCTCGGAAAAATGCACCACGTTGATTTATTGACTAGTCGTAGGCTTTGTTTTTCTTCACATCTGCCCAAGGTTATCACTTTTCAGAAGTATGAGTTCCACAGGTTGCTTGTAGAAATTGAGATTGGCGAGATTTGTTTATTTTTCATAATTCCCAAATTTCAAATTCTTTAAATTTAAAATGATAAGCAATTTCAAGAGTCACTTAAAGGTAATTGAGATTATGCCCAAATGAGAGGACAATTTGCTGAAAGATATAATTTTTCCAAAATAAAAGTGTTTGCGGATATGTTAAGATTTATAGATTTTTCTTCAAGAACAAATGTCAGTAAGAATAAAGATAACATACAACTCCAGAATATTAAAGTTATAAATGTTCTGCAGAATAATGATAGATTGTTAGTGCCAAAGATCACTATTAACATCATGGATATACTCCAGCTTTGTGGGCAGAATGTCGTAGTTTTAAGCTTCCAAGCAAAATGCTGATGGACTACATGCTAACATTACCAATTCAGTATTCTGTTATTAGCAGTCTTTACCTGTAAATGCACATCTATTGCCTGTTTTGAACCATCATACTTAACATTATTTTGGCATTTGTTTTCTGCAGCAAAACAGGCAAGACTGAGGCAGGCCAAAGAAGAAGCTGAGAAGGAAATCGCTGAATTCCGTGCACAAATGGAAGCTGATTTTCAGAGGAAACTTGCAGAGGTAAAATCTCTGAAAAGAATATACAGGACACAGAAGTATTTGGAAAATTATGGAAATCAATATCGTATGAGAATTGCTGCTTTGTGTCTAAGGGGCACAAAGTTCTTAACTGTTTATGTTCTATATGGACTTGGACACATCTATCTGGTTATCATTTTTGTATACCTGTATCACTCTGTATTTAAAATAAGTCAAAGAAGAAGTGTGATAGTGTATTTATACATTTTTGCCTGCATGTGAGTTTGCATGTCTCGTTGAATTTATTCTCTATTCCTTTTTGATCAACCTGTGTACCTCAAGTATTTTACTTTCGGAATTCATTTTCTAGTTATAGAGTCCATTCTTCTTTTGTGTTATCATCATATGATCAGTATCCTGGTATAATTTAATTATCTTAATGCCTGGGGACACTTACTGCCGATTTATTTTCTTTCGACTTTGGTATGTTTGTCTTTCTTGTGAAAATGTTATTTAAGTTGTGTATGTTTCTCATGTATATGCTAACAAGATGAAATTTCCGTGTTGATAGACCAGCGGAGATTCGGGTGCTAATGTTAAAAGACTTGAAAAAGAAACCGAGGGTAAGATTGGTCACCTTAAGACAGAGGCTTCAAGAATCTCCTCAGATGTTGTTCAGATGCTTATGAGGCACGTTACTACCGTAAAGAATTAAGATGTTGGAAGCTGACGGACGACGTTACATGTCCATGATTGTGGTTGTTCCTCTGTTTTCTTGTCATGAATGTAGTAATTTATAATGTGTAATTGATGATTGGTTGCCTTTCTATGGAATAAGAGTAAAAGGGCATTGGCATGTCCTGTTTTGTATCAGTATTTTTTACTTTCTAAGGAGAGAAATGAAACACTCAAAAAAATTCTCGGGTT

CDS:

Transcript:

Protein:

Gene Ontology

GO term	Description	Category
GO:0015992	proton transport	biological_process
GO:0016471	vacuolar proton-transporting V-type ATPase complex	cellular_component
GO:0016820	hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	molecular_function
GO:0055085	transmembrane transport	biological_process

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Pathway ID
K02152	ATPeV1G	-	Oxidative phosphorylation	ko00190

PlantCyC

Gene	Enzyme ID	Description	Pathway	Pathway id
CRO_T000763	EC-3.6.3.14	ATP synthase	adenosine ribonucleotides de novo biosynthesis	PWY-7219

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03179.12	V-ATPase_G	29	132	1.7e-33

Expression pattern

SRA Experiment	Description	FPKM
ERR364390	mixed tissue CK	566.598
SRR122236	mixed tissue RA CK	155.9965
SRR122237	mixed tissue RB CK	171.8665
SRR122250	callus YE 0.3mg/ml CK	104.339
SRR122247	callus YE 0.3mg/ml 6h	137.322
SRR122248	callus YE 0.3mg/ml 12h	95.1774
SRR122249	callus YE 0.3mg/ml 24h	96.8774
SRR122242	callus MeJA 100um 0h	108.114
SRR122246	callus MeJA 100um 6h	164.345
SRR122240	callus MeJA 100um 12h	179.19
SRR122241	callus MeJA 100um 24h	149.351
SRR122239	flower CK 1	429.159
SRR1271859	flower CK 2	490.1285
SRR1144633	healthy flowers CK	544.1915
SRR1144634	flowers PnWB infected	719.9435
SRR122257	hairy root CK	294.244
SRR122258	hairy root MeJA 250um CK	304.648
SRR122259	hairy root MeJA 250um 24h	455.389
SRR122256	hairy root RebH F CK	275.991
SRR122255	hairy root TDCi CK	266.38
SRR122260	hairy root TDCi MeJA 250um CK	315.867
SRR122261	hairy root TDCi MeJA 250um 24h	436.668
SRR1820161	Hairy roots CK BAI1 14	359.755
SRR1820157	Hairy roots CK BAI1 18	264.654
SRR1820149	Hairy roots CK BAI1 19	283.163
SRR1820238	Hairy roots CK GUS 3	331.361
SRR1820233	Hairy roots CK GUS 4	305.617
SRR1820326	Hairy roots CK GUS 5	289.5275
SRR2098821	hairy roots OE AS CK rep1	332.853
SRR2099440	hairy roots OE AS CK rep2	237.197
SRR122252	immature leaf CK	216.106
SRR342023	leaf CK 1	219.521
SRR342022	leaf CK 2	200.674
SRR342019	leaf CK 3	232.4655
SRR342017	leaf CK 4	235.6925
SRR1271857	leaf CK 5	145.418
SRR122251	mature leaf CK	317.393
SRR648705	root CK 1	519.0135
SRR1271858	root CK 2	277.313
SRR122254	root CK 3	325.353
SRR648707	root MeJA 24h	685.809
SRR648709	root MeJA 24h DSN normalized	614.6285
SRR837772	seedling CK	400.215
SRR122243	sterile seedlings AE CK 1	271.312
SRR122245	sterile seedlings AE CK 2	381.431
SRR122244	sterile seedlings AF MeJA 6um 12d	292.974
SRR122253	stem CK	207.623
SRR646572	shoots CK	288.831
SRR647068	shoots MeJA 6h 1	375.479
SRR646596	shoots MeJA 6h 2	329.695
SRR646604	shoots MeJA 24h	316.119
SRR924147	suspension cells EX ORCA2 CK	271.699
SRR924148	suspension cells EX ORCA3 CK	545.4985

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