CFinderADM001869's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| adenosine ribonucleotides de novo biosynthesis | 6.76E-10 | plantCyc |
| vacuolar proton-transporting V-type ATPase complex | 3.47E-06 | GO:0016471 |
| H3 histone acetyltransferase activity | 6.91E-06 | GO:0010484 |
| histone acetyltransferase complex | 8.66E-06 | GO:0000123 |
| histone H3 acetylation | 8.78E-06 | GO:0043966 |
| root morphogenesis | 8.78E-06 | GO:0010015 |
| Notch signaling pathway | 6.15E-05 | KEGG pathway |
| hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances | 6.32E-05 | GO:0016820 |
| Transcription_related, Transcription regulator: GNAT | 8.24E-05 | TF family |
| flower development | 0.000255828 | GO:0009908 |
| response to light stimulus | 0.000255828 | GO:0009416 |
| proton transport | 0.00062833 | GO:0015992 |
| mRNA surveillance pathway | 0.003010874 | KEGG pathway |
| RNA transport | 0.006423675 | KEGG pathway |
| Oxidative phosphorylation | 0.010070245 | KEGG pathway |
| transmembrane transport | 0.013869915 | GO:0055085 |
| RNA binding | 0.016973018 | GO:0003723 |
| nucleotide binding | 0.02889556 | GO:0000166 |
| DNA binding | 0.048926206 | GO:0003677 |
| cytoplasm | 0.049415538 | GO:0005737 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000081 | AT5G58040 (7.00E-24) | ATFIP1[V]|homolog of yeast FIP1 [V] |
| CRO_T000763 | AT3G01390 (1.00E-31) | VMA10|vacuolar membrane ATPase 10 |
| CRO_T003138 | AT1G49760 (6.00E-46) | PAB8|poly(A) binding protein 8 |
| CRO_T017005 | AT4G02620 (1.00E-40) | vacuolar ATPase subunit F family protein |
| CRO_T022054 | AT1G74630 (3.00E-110) | Tetratricopeptide repeat (TPR)-like superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000858 | H3 histone acetyltransferase activity root morphogenesis histone H3 acetylation Notch signaling pathway histone acetyltransferase complex maturation of SSU-rRNA Transcription_related, Transcription regulator: GNAT adenosine ribonucleotides de novo biosynthesis response to light stimulus flower development Ribosome biogenesis in eukaryotes transferase activity, transferring acyl groups small-subunit processome nucleolus | details |
| CFinderADM001173 | histone acetyltransferase binding H3 histone acetyltransferase activity histone H3 acetylation root morphogenesis RNA polymerase II transcriptional preinitiation complex assembly transcription factor binding DNA topoisomerase activity histone acetyltransferase complex transcription factor TFIID complex chloroplast RNA processing Notch signaling pathway Transcription_related, Transcription regulator: GNAT adenosine ribonucleotides de novo biosynthesis transcription coactivator activity transcription regulatory region DNA binding response to light stimulus flower development Basal transcription factors Peroxisome regulation of transcription from RNA polymerase II promoter chloroplast unfolded protein binding zinc ion binding embryo development ending in seed dormancy protein folding ATP binding | details |
| CFinderADM001382 | posttranscriptional regulation of gene expression heat acclimation translational elongation DNA replication nucleotidyltransferase activity translation elongation factor activity Ribosome Purine metabolism RNA transport Spliceosome GTPase activity GTP binding catalytic activity nucleic acid binding RNA binding nucleotide binding | details |
| CFinderADM001946 | adenosine ribonucleotides de novo biosynthesis histone H3 acetylation root morphogenesis formation of glycosidic bonds, GlycosylTransferases: GTnc H3 histone acetyltransferase activity Notch signaling pathway histone acetyltransferase complex Transcription_related, Transcription regulator: GNAT flower development response to light stimulus proton-transporting ATP synthase complex, catalytic core F(1) ATP synthesis coupled proton transport proton-transporting ATP synthase activity, rotational mechanism proton-transporting ATPase activity, rotational mechanism mitochondrial inner membrane Oxidative phosphorylation RNA binding | details |
| CFinderADM002059 | adenosine ribonucleotides de novo biosynthesis ATPase activity, coupled to transmembrane movement of substances chorismate synthase activity H3 histone acetyltransferase activity regulation of phosphoprotein phosphatase activity histone H3 acetylation protein phosphatase type 1 complex chorismate biosynthesis from 3-dehydroquinate root morphogenesis chorismate biosynthetic process histone acetyltransferase complex transmembrane transport plant-type vacuole protein phosphatase inhibitor activity Transcription_related, Transcription regulator: GNAT Notch signaling pathway aromatic amino acid family biosynthetic process flower development response to light stimulus cellular amino acid biosynthetic process FMN binding GTPase activator activity ABC transporters pollen development positive regulation of GTPase activity peptidase activity signal transduction embryo development ending in seed dormancy Biosynthesis of amino acids Endocytosis vacuolar membrane nucleolus Golgi apparatus Oxidative phosphorylation proteolysis chloroplast stroma | details |
Expression profiles
 Show details about module gene expression profiling |