CRO_T001584's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T001584 | type one serine/threonine protein phosphatase |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT1G10430 | 2.00E-67 | PP2A-2|protein phosphatase 2A-2 |
| Arabidopsis thaliana | AT1G08420 | 2.00E-60 | BSL2|BRI1 suppressor 1 (BSU1)-like 2 |
| Arabidopsis thaliana | AT1G03445 | 9.00E-58 | BSU1|BRI1 SUPPRESSOR 1 |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | cro-novel-42 | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| CFinderADM001643 | mRNA surveillance pathway protein serine/threonine phosphatase activity protein dephosphorylation | global network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T001584 | scaffolds.min_1000bp | scaffold_3001272 | 36414 | 42114 | + |
Gene detail image
| Genome: |
| CRO_T001584 |
| CDS: |
| CRO_T001584 |
| Transcript: |
| CRO_T001584 |
| Protein: |
| CRO_T001584 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0004722 | protein serine/threonine phosphatase activity | molecular_function |
| GO:0006470 | protein dephosphorylation | biological_process |
| GO:0046872 | metal ion binding | molecular_function |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| K06269 | PPP1C | EC:3.1.3.16 | mRNA surveillance pathway | ko03015 |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF16891.2 | STPPase_N | 13 | 60 | 1e-20 |
| PF00149.25 | Metallophos | 134 | 321 | 1.5e-38 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 52.9454 | |
| SRR122236 | mixed tissue RA CK | 47.23435 | |
| SRR122237 | mixed tissue RB CK | 49.1197 | |
| SRR122250 | callus YE 0.3mg/ml CK | 18.6594 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 27.0345 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 25.4515 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 21.7087 | |
| SRR122242 | callus MeJA 100um 0h | 24.0854 | |
| SRR122246 | callus MeJA 100um 6h | 22.087 | |
| SRR122240 | callus MeJA 100um 12h | 24.4841 | |
| SRR122241 | callus MeJA 100um 24h | 37.6179 | |
| SRR122239 | flower CK 1 | 54.6745 | |
| SRR1271859 | flower CK 2 | 23.7532 | |
| SRR1144633 | healthy flowers CK | 46.87895 | |
| SRR1144634 | flowers PnWB infected | 48.3193 | |
| SRR122257 | hairy root CK | 35.9047 | |
| SRR122258 | hairy root MeJA 250um CK | 44.8232 | |
| SRR122259 | hairy root MeJA 250um 24h | 50.6401 | |
| SRR122256 | hairy root RebH F CK | 38.7369 | |
| SRR122255 | hairy root TDCi CK | 45.6809 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 48.1211 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 54.0061 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 28.6151 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 31.4966 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 31.1717 | |
| SRR1820238 | Hairy roots CK GUS 3 | 29.4363 | |
| SRR1820233 | Hairy roots CK GUS 4 | 29.0302 | |
| SRR1820326 | Hairy roots CK GUS 5 | 27.7448 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 87.7395 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 37.6531 | |
| SRR122252 | immature leaf CK | 61.1751 | |
| SRR342023 | leaf CK 1 | 52.3046 | |
| SRR342022 | leaf CK 2 | 47.8799 | |
| SRR342019 | leaf CK 3 | 53.47895 | |
| SRR342017 | leaf CK 4 | 56.49565 | |
| SRR1271857 | leaf CK 5 | 13.85205 | |
| SRR122251 | mature leaf CK | 59.9098 | |
| SRR648705 | root CK 1 | 49.98425 | |
| SRR1271858 | root CK 2 | 13.45985 | |
| SRR122254 | root CK 3 | 41.4919 | |
| SRR648707 | root MeJA 24h | 64.0415 | |
| SRR648709 | root MeJA 24h DSN normalized | 50.55665 | |
| SRR837772 | seedling CK | 29.3462 | |
| SRR122243 | sterile seedlings AE CK 1 | 40.5429 | |
| SRR122245 | sterile seedlings AE CK 2 | 43.7574 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 39.2379 | |
| SRR122253 | stem CK | 52.3419 | |
| SRR646572 | shoots CK | 28.9385 | |
| SRR647068 | shoots MeJA 6h 1 | 40.1115 | |
| SRR646596 | shoots MeJA 6h 2 | 35.1289 | |
| SRR646604 | shoots MeJA 24h | 46.34615 | |
| SRR924147 | suspension cells EX ORCA2 CK | 44.7077 | |
| SRR924148 | suspension cells EX ORCA3 CK | 46.38035 |