CRO_T001959's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T001959 | hypothetical protein |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | - | - |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| TissueCFM000312 | Fatty acid elongation Basal transcription factors cytokinins 7-N-glucoside biosynthesis cytokinins 9-N-glucoside biosynthesis quercetin gentiotetraside biosynthesis quercetin glucoside biosynthesis (Allium) very long chain fatty acid biosynthesis I quercetin 3-O-glucosyltransferase activity quercetin 7-O-glucosyltransferase activity transferase activity, transferring acyl groups other than amino-acyl groups Transcription_related, Transcription factor: B3 Transcription_related, Transcription factor: TCP | tissue preferential network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T001959 | scaffolds.min_1000bp | scaffold_3052659 | 11774 | 13611 | + |
Gene detail image
| Genome: |
| CRO_T001959 |
| CDS: |
| CRO_T001959 |
| Transcript: |
| CRO_T001959 |
| Protein: |
| CRO_T001959 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| -- | -- | -- |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 9.454185 | |
| SRR122236 | mixed tissue RA CK | 48.3297 | |
| SRR122237 | mixed tissue RB CK | 51.13825 | |
| SRR122250 | callus YE 0.3mg/ml CK | 4.02524 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 1.65316 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 5.47968 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 7.28681 | |
| SRR122242 | callus MeJA 100um 0h | 1.40572 | |
| SRR122246 | callus MeJA 100um 6h | 0.235024 | |
| SRR122240 | callus MeJA 100um 12h | 0.87759 | |
| SRR122241 | callus MeJA 100um 24h | 0.122838 | |
| SRR122239 | flower CK 1 | 93.2857 | |
| SRR1271859 | flower CK 2 | 31.63435 | |
| SRR1144633 | healthy flowers CK | 29.8118 | |
| SRR1144634 | flowers PnWB infected | 64.58835 | |
| SRR122257 | hairy root CK | 0.748779 | |
| SRR122258 | hairy root MeJA 250um CK | 0.323477 | |
| SRR122259 | hairy root MeJA 250um 24h | 0 | |
| SRR122256 | hairy root RebH F CK | 9.5843 | |
| SRR122255 | hairy root TDCi CK | 0.601164 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 0.79969 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 0 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 0.119528 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 0.348887 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 0.30978 | |
| SRR1820238 | Hairy roots CK GUS 3 | 0.207158 | |
| SRR1820233 | Hairy roots CK GUS 4 | 1.00931 | |
| SRR1820326 | Hairy roots CK GUS 5 | 0.823387 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 0.230328 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 0.69135 | |
| SRR122252 | immature leaf CK | 43.2865 | |
| SRR342023 | leaf CK 1 | 21.116 | |
| SRR342022 | leaf CK 2 | 30.0666 | |
| SRR342019 | leaf CK 3 | 29.01675 | |
| SRR342017 | leaf CK 4 | 35.8887 | |
| SRR1271857 | leaf CK 5 | 34.52515 | |
| SRR122251 | mature leaf CK | 46.3126 | |
| SRR648705 | root CK 1 | 1.62082 | |
| SRR1271858 | root CK 2 | 0.0650327 | |
| SRR122254 | root CK 3 | 16.9215 | |
| SRR648707 | root MeJA 24h | 0.451566 | |
| SRR648709 | root MeJA 24h DSN normalized | 0.04596375 | |
| SRR837772 | seedling CK | 6.222145 | |
| SRR122243 | sterile seedlings AE CK 1 | 17.2771 | |
| SRR122245 | sterile seedlings AE CK 2 | 3.96522 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 9.61429 | |
| SRR122253 | stem CK | 2.35827 | |
| SRR646572 | shoots CK | 22.71005 | |
| SRR647068 | shoots MeJA 6h 1 | 18.987 | |
| SRR646596 | shoots MeJA 6h 2 | 20.3163 | |
| SRR646604 | shoots MeJA 24h | 28.2156 | |
| SRR924147 | suspension cells EX ORCA2 CK | 3.69949 | |
| SRR924148 | suspension cells EX ORCA3 CK | 2.88294 |