CRO_T003235's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T003235 | Tetraspanin family protein |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT2G20740 | 2.00E-35 | Tetraspanin family protein |
| Arabidopsis thaliana | AT2G20230 | 1.00E-33 | Tetraspanin family protein |
| Arabidopsis thaliana | AT1G32400 | 3.00E-21 | TOM2A|tobamovirus multiplication 2A |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| CFinderADM000946 | succinate dehydrogenase (ubiquinone) activity tricarboxylic acid cycle mitochondrial inner membrane electron transport chain TCA cycle II (plants and fungi) aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) Carbon metabolism flavin adenine dinucleotide binding 3 iron, 4 sulfur cluster binding ErbB signaling pathway Protein_kinases_phosphatases, PPC:1.15.3: Leucine Rich Repeat Kinase IV protein phosphorylation protein serine/threonine kinase activity 2 iron, 2 sulfur cluster binding Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase regulation of cellular process 4 iron, 4 sulfur cluster binding Transcription_related, Transcription factor: ERF Transcription_related, Transcription factor: GRAS electron carrier activity kinase activity phosphorylation adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | global network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T003235 | scaffolds.min_1000bp | scaffold_3066715 | 11555 | 15916 | - |
Gene detail image
| Genome: |
| CRO_T003235 |
| CDS: |
| CRO_T003235 |
| Transcript: |
| CRO_T003235 |
| Protein: |
| CRO_T003235 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0016021 | integral component of membrane | cellular_component |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 35.09025 | |
| SRR122236 | mixed tissue RA CK | 8.936845 | |
| SRR122237 | mixed tissue RB CK | 9.622115 | |
| SRR122250 | callus YE 0.3mg/ml CK | 36.0086 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 39.5857 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 29.7759 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 36.8207 | |
| SRR122242 | callus MeJA 100um 0h | 39.3385 | |
| SRR122246 | callus MeJA 100um 6h | 27.3393 | |
| SRR122240 | callus MeJA 100um 12h | 32.8737 | |
| SRR122241 | callus MeJA 100um 24h | 37.4271 | |
| SRR122239 | flower CK 1 | 51.1678 | |
| SRR1271859 | flower CK 2 | 66.15945 | |
| SRR1144633 | healthy flowers CK | 44.34195 | |
| SRR1144634 | flowers PnWB infected | 34.48265 | |
| SRR122257 | hairy root CK | 17.0095 | |
| SRR122258 | hairy root MeJA 250um CK | 22.4391 | |
| SRR122259 | hairy root MeJA 250um 24h | 38.742 | |
| SRR122256 | hairy root RebH F CK | 33.3097 | |
| SRR122255 | hairy root TDCi CK | 20.8509 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 22.6872 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 33.754 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 22.2233 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 23.1867 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 23.517 | |
| SRR1820238 | Hairy roots CK GUS 3 | 24.2794 | |
| SRR1820233 | Hairy roots CK GUS 4 | 24.7939 | |
| SRR1820326 | Hairy roots CK GUS 5 | 24.7579 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 29.3946 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 20.7452 | |
| SRR122252 | immature leaf CK | 14.1647 | |
| SRR342023 | leaf CK 1 | 17.33755 | |
| SRR342022 | leaf CK 2 | 22.5511 | |
| SRR342019 | leaf CK 3 | 22.3176 | |
| SRR342017 | leaf CK 4 | 25.55355 | |
| SRR1271857 | leaf CK 5 | 11.40995 | |
| SRR122251 | mature leaf CK | 17.7732 | |
| SRR648705 | root CK 1 | 32.58285 | |
| SRR1271858 | root CK 2 | 15.3811 | |
| SRR122254 | root CK 3 | 21.1296 | |
| SRR648707 | root MeJA 24h | 36.938 | |
| SRR648709 | root MeJA 24h DSN normalized | 36.74375 | |
| SRR837772 | seedling CK | 12.52765 | |
| SRR122243 | sterile seedlings AE CK 1 | 23.7206 | |
| SRR122245 | sterile seedlings AE CK 2 | 24.8951 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 25.6049 | |
| SRR122253 | stem CK | 23.1452 | |
| SRR646572 | shoots CK | 16.3104 | |
| SRR647068 | shoots MeJA 6h 1 | 21.308 | |
| SRR646596 | shoots MeJA 6h 2 | 24.3682 | |
| SRR646604 | shoots MeJA 24h | 15.91865 | |
| SRR924147 | suspension cells EX ORCA2 CK | 44.67855 | |
| SRR924148 | suspension cells EX ORCA3 CK | 28.60055 |