CRO_T006103's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T006103 | BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT1G55750 | 2.00E-148 | BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) |
| Arabidopsis thaliana | AT1G55750 | 2.00E-148 | BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) |
| Arabidopsis thaliana | AT3G61420 | 6.00E-142 | BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | CRO_T019558 | ||
| miRNA-Target Relationship | cro-novel-136 | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| CFinderADM000966 | Transcription_related, Transcription factor: BSD phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity cardiolipin biosynthesis II phosphatidylglycerol biosynthesis I (plastidic) phosphatidylglycerol biosynthesis II (non-plastidic) regulation of mitotic cell cycle xenobiotic-transporting ATPase activity regulation of cyclin-dependent protein serine/threonine kinase activity protein tyrosine/serine/threonine phosphatase activity xenobiotic transport xylogalacturonan biosynthesis cellular macromolecule metabolic process peptidyl-tyrosine dephosphorylation nucleic acid metabolic process Transcription_related, Transcription factor: NF-YC protein tyrosine phosphatase activity non-membrane spanning protein tyrosine kinase activity ABC transporters Basal transcription factors peptidyl-tyrosine phosphorylation formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII Plant-pathogen interaction drug transmembrane transport protein heterodimerization activity endomembrane system nucleus Ubiquitin_Proteasome_system, E3 adaptor: DWD ATP binding adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | global network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T006103 | scaffolds.min_1000bp | scaffold_2967508 | 8436 | 17672 | - |
Gene detail image
| Genome: |
| CRO_T006103 |
| CDS: |
| CRO_T006103 |
| Transcript: |
| CRO_T006103 |
| Protein: |
| CRO_T006103 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0044260 | cellular macromolecule metabolic process | biological_process |
| GO:0090304 | nucleic acid metabolic process | biological_process |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | BSD |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| K03141 | TFIIH1 | - | Basal transcription factors | ko03022 |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08567.8 | PH_TFIIH | 21 | 92 | 3.4e-11 |
| PF03909.14 | BSD | 198 | 246 | 7.6e-11 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 8.388435 | |
| SRR122236 | mixed tissue RA CK | 10.17645 | |
| SRR122237 | mixed tissue RB CK | 9.810795 | |
| SRR122250 | callus YE 0.3mg/ml CK | 18.3481 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 14.4392 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 18.1496 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 17.5997 | |
| SRR122242 | callus MeJA 100um 0h | 14.0814 | |
| SRR122246 | callus MeJA 100um 6h | 15.1525 | |
| SRR122240 | callus MeJA 100um 12h | 14.4403 | |
| SRR122241 | callus MeJA 100um 24h | 15.6869 | |
| SRR122239 | flower CK 1 | 9.98814 | |
| SRR1271859 | flower CK 2 | 8.615455 | |
| SRR1144633 | healthy flowers CK | 9.344975 | |
| SRR1144634 | flowers PnWB infected | 12.30145 | |
| SRR122257 | hairy root CK | 15.536 | |
| SRR122258 | hairy root MeJA 250um CK | 13.321 | |
| SRR122259 | hairy root MeJA 250um 24h | 15.5603 | |
| SRR122256 | hairy root RebH F CK | 19.4328 | |
| SRR122255 | hairy root TDCi CK | 17.5051 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 12.2992 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 14.7053 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 23.9603 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 24.0467 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 22.336 | |
| SRR1820238 | Hairy roots CK GUS 3 | 23.3426 | |
| SRR1820233 | Hairy roots CK GUS 4 | 23.3718 | |
| SRR1820326 | Hairy roots CK GUS 5 | 27.43535 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 16.8787 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 12.1618 | |
| SRR122252 | immature leaf CK | 8.25671 | |
| SRR342023 | leaf CK 1 | 8.560685 | |
| SRR342022 | leaf CK 2 | 8.647155 | |
| SRR342019 | leaf CK 3 | 8.3619 | |
| SRR342017 | leaf CK 4 | 6.640815 | |
| SRR1271857 | leaf CK 5 | 10.1725 | |
| SRR122251 | mature leaf CK | 9.84821 | |
| SRR648705 | root CK 1 | 9.11154 | |
| SRR1271858 | root CK 2 | 11.3535 | |
| SRR122254 | root CK 3 | 13.6317 | |
| SRR648707 | root MeJA 24h | 10.407 | |
| SRR648709 | root MeJA 24h DSN normalized | 9.039075 | |
| SRR837772 | seedling CK | 3.044525 | |
| SRR122243 | sterile seedlings AE CK 1 | 12.009 | |
| SRR122245 | sterile seedlings AE CK 2 | 13.4637 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 12.1657 | |
| SRR122253 | stem CK | 16.3052 | |
| SRR646572 | shoots CK | 8.512075 | |
| SRR647068 | shoots MeJA 6h 1 | 10.59185 | |
| SRR646596 | shoots MeJA 6h 2 | 9.05164 | |
| SRR646604 | shoots MeJA 24h | 8.0271 | |
| SRR924147 | suspension cells EX ORCA2 CK | 10.58035 | |
| SRR924148 | suspension cells EX ORCA3 CK | 11.65455 |