miRNA detailed information
miRNA detail image
Location informaition
| Type | ID | Scaffold | Start | End | Strand |
|---|
| mature | cro-novel-136 | scaffold_3065291 | 13812 | 13790 | - |
| precursor | cro-NOVEL-136 | scaffold_3065291 | 13863 | 13788 | - |
Sequence and structure information
Mature sequence[cro-novel-136] AGUUUGUAGGACUGGACAUCUAU |
Stem-loop sequence[cro-NOVEL-136] AUAUGGGAUUGUCCACACCCCCAACUCCAGGCAUGGACAUCUGAAGCGUGAAGUUUGUAGGACUGGACAUCUAUGA |
Secondary structure of stem-loop sequence 
To make high resolution picture for your own, please download the .ps file. |
miRNA target information
| Target gene | Alignment | Annotation | Expection | Method |
|---|
| CRO_T006103 | | | ncRNA: | 23 | UAUCUACAGGUCAGGAUGUUUGA | 1 | | | | | ||||||||||=|||||||||||| | | | | targets: | 3811 | AUAGAUGUCCGGUCCUACAAACU | 3833 |
| BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) | 1.5 | psRNATarget[Detail] | | CRO_T012301 | | | ncRNA: | 23 | UAUCUACAGGUCAGGAUGUUUGA | 1 | | | | | =*||||||=||||||*||||||| | | | | targets: | 748 | GCAGAUGUUCAGUCCAACAAACU | 770 |
| transducin family protein / WD-40 repeat family protein | 2.5 | psRNATarget[Detail] | | CRO_T019754 | | | ncRNA: | 23 | UAUCUACAGGUCAGGAUGUUUGA | 1 | | | | | =|||||||||||||||||||||| | | | | targets: | 11312 | GUAGAUGUCCAGUCCUACAAACU | 11334 |
| Transmembrane amino acid transporter family protein | 0 | psRNATarget[Detail] | | CRO_T024675 | | | ncRNA: | 23 | UAUCUACAGGUCAGGAUGUUUGA | 1 | | | | | |*||||||||||||||=|||||| | | | | targets: | 4519 | ACAGAUGUCCAGUCCUGCAAACU | 4541 |
| aminophospholipid ATPase | 1.5 | psRNATarget[Detail] | | CRO_T025799 | | | ncRNA: | 23 | UAUCUACAGGUCAGGAUGUUUGA | 1 | | | | | =*|*|||||=|||=||||||||| | | | | targets: | 941 | GCAAAUGUCUAGUUCUACAAACU | 963 |
| Protein of unknown function (DUF1118) | 2.5 | psRNATarget[Detail] | | CRO_T031943 | | | ncRNA: | 23 | UAUCUACAGGUCAGGAUGUUUGA | 1 | | | | | =*||||||||||||||=|||||| | | | | targets: | 3582 | GCAGAUGUCCAGUCCUGCAAACU | 3604 |
| Cysteine-rich TM module stress tolerance domain containing protein | 1.5 | psRNATarget[Detail] |
|
Expression pattern
| Tissue | Treat | FPKM value |
|---|
| seedling | control | 10.34 |
| seedling | MeJA treatment 1h | 7.3 |
| seedling | MeJA treatment 8h | 10.23 |
| seedling | MeJA treatment 24h | 14.53 |