CRO_T019754's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T019754 | Transmembrane amino acid transporter family protein |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT1G25530 | 3.00E-166 | Transmembrane amino acid transporter family protein |
| Arabidopsis thaliana | AT5G40780 | 1.00E-132 | LHT1|lysine histidine transporter 1 |
| Arabidopsis thaliana | AT1G24400 | 1.00E-131 | AATL2|AMINO ACID TRANSPORTER-LIKE PROTEIN 2;ATLHT2|ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2;LHT2|lysine histidine transporter 2 |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | cro-novel-136 | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| CFinderADM001931 | potassium ion transmembrane transporter activity potassium ion transmembrane transport cell tip growth amino acid transmembrane transporter activity amino acid transmembrane transport integral component of membrane Ubiquitin_Proteasome_system, E3: U-box ligase activity ubiquitin-protein transferase activity protein ubiquitination vacuolar membrane plasma membrane | global network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T019754 | scaffolds.min_1000bp | scaffold_3067727 | 13032 | 39286 | + |
Gene detail image
| Genome: |
| CRO_T019754 |
| CDS: |
| CRO_T019754 |
| Transcript: |
| CRO_T019754 |
| Protein: |
| CRO_T019754 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0003333 | amino acid transmembrane transport | biological_process |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0015171 | amino acid transmembrane transporter activity | molecular_function |
| GO:0016021 | integral component of membrane | cellular_component |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF11265.5 | Med25_VWA | 6 | 62 | 1.5e-05 |
| PF11265.5 | Med25_VWA | 69 | 180 | 1.3e-19 |
| PF01490.15 | Aa_trans | 841 | 1195 | 2.7e-79 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 24.13775 | |
| SRR122236 | mixed tissue RA CK | 7.84966 | |
| SRR122237 | mixed tissue RB CK | 7.948645 | |
| SRR122250 | callus YE 0.3mg/ml CK | 19.1034 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 24.988 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 23.0314 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 19.4046 | |
| SRR122242 | callus MeJA 100um 0h | 22.3006 | |
| SRR122246 | callus MeJA 100um 6h | 23.2678 | |
| SRR122240 | callus MeJA 100um 12h | 25.4505 | |
| SRR122241 | callus MeJA 100um 24h | 24.6439 | |
| SRR122239 | flower CK 1 | 15.5627 | |
| SRR1271859 | flower CK 2 | 13.54015 | |
| SRR1144633 | healthy flowers CK | 16.1635 | |
| SRR1144634 | flowers PnWB infected | 21.14645 | |
| SRR122257 | hairy root CK | 26.4997 | |
| SRR122258 | hairy root MeJA 250um CK | 34.586 | |
| SRR122259 | hairy root MeJA 250um 24h | 27.1272 | |
| SRR122256 | hairy root RebH F CK | 19.953 | |
| SRR122255 | hairy root TDCi CK | 30.5568 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 29.9486 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 23.7404 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 19.2289 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 17.9009 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 23.4829 | |
| SRR1820238 | Hairy roots CK GUS 3 | 23.2852 | |
| SRR1820233 | Hairy roots CK GUS 4 | 18.5242 | |
| SRR1820326 | Hairy roots CK GUS 5 | 21.40945 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 21.2257 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 19.3005 | |
| SRR122252 | immature leaf CK | 12.9638 | |
| SRR342023 | leaf CK 1 | 18.9153 | |
| SRR342022 | leaf CK 2 | 16.2177 | |
| SRR342019 | leaf CK 3 | 20.162 | |
| SRR342017 | leaf CK 4 | 22.80915 | |
| SRR1271857 | leaf CK 5 | 12.2076 | |
| SRR122251 | mature leaf CK | 12.8337 | |
| SRR648705 | root CK 1 | 6.36839 | |
| SRR1271858 | root CK 2 | 15.506 | |
| SRR122254 | root CK 3 | 23.4264 | |
| SRR648707 | root MeJA 24h | 7.02058 | |
| SRR648709 | root MeJA 24h DSN normalized | 7.004735 | |
| SRR837772 | seedling CK | 19.9506 | |
| SRR122243 | sterile seedlings AE CK 1 | 17.9905 | |
| SRR122245 | sterile seedlings AE CK 2 | 14.1765 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 16.7534 | |
| SRR122253 | stem CK | 21.7469 | |
| SRR646572 | shoots CK | 16.55035 | |
| SRR647068 | shoots MeJA 6h 1 | 16.8355 | |
| SRR646596 | shoots MeJA 6h 2 | 15.7897 | |
| SRR646604 | shoots MeJA 24h | 16.0559 | |
| SRR924147 | suspension cells EX ORCA2 CK | 10.68225 | |
| SRR924148 | suspension cells EX ORCA3 CK | 6.146685 |