Gene detail

CRO_T006824's detailed information

Annotation (DRYAD)

Gene ID	Functional Annotation
CRO_T006824	myb domain protein

Blast top3 hits

Species	Gene ID	E-value	Annotation
Arabidopsis thaliana	AT1G63910	6.00E-71	AtMYB103\|myb domain protein 103
Arabidopsis thaliana	AT5G26660	6.00E-53	ATMYB86\|myb domain protein 86
Arabidopsis thaliana	AT3G13890	8.00E-53	ATMYB26\|myb domain protein 26;MS35\|MALE STERILE 35

Network

Network Category	Global Network	Tissue Preferential Network	Treat Response Network
Coexpression Positive	Top300 PCC Genelist	Top300 PCC Genelist	Top300 PCC Genelist
Coexpression Negative	Top300 PCC Genelist	Top300 PCC Genelist	Top300 PCC Genelist
PPI Relationship	Null
miRNA-Target Relationship	cro-novel-102

Functional module

Module ID	Function Annotation	Category
cro-novel-102	membrane nucleotide-excision repair, DNA incision, 5'-to lesion plasmodesma organization DNA geometric change regulation of plant-type cell wall cellulose biosynthetic process nucleotide-excision repair involved in interstrand cross-link repair nucleotide-excision repair factor 1 complex maintenance of root meristem identity plant-type cell wall modification involved in multidimensional cell growth response to glucose resolution of meiotic recombination intermediates cellulose microfibril organization double-strand break repair via homologous recombination cell differentiation response to light stimulus formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: MYB polyvinyl alcohol degradation Nucleotide excision repair RNA degradation	miRNA target

Location

Gene	Assembly	Scaffold	Start	End	Strand
CRO_T006824	scaffolds.min_1000bp	scaffold_3070852	10334	12731	+

Gene detail image

more details in UCSC

Sequences

Genome:
CRO_T006824
ATGGGGCACCATTCATGTTGCAACCAGCAGAAGGTTAAAAGAGGGCTATGGTCACCTGAAGAAGATGAGAAATTAATTAGATATATTACTACTCATGGCTATGGTTGCTGGAGTGAAGTTCCTGAAAAAGCTGGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAAATATTTTTCTTTCTTTAAGTATAATTTCACTTAAATTAATTCATGAGCATTAATATTAATCCTAATTACCGATGCTATTTTTAAGAGTACATTTATCATTTTCATCCAGTTGAAATTCTTGATATTTGAGACGTTTTAATGATGGAATCTATAGTTCCAAATTTTATTTATTTATTTTTTTTGGTAGTGTACTTAAGTATGTATGAAGACAATTGAGCGTTCTTAATCCCTAATTCGGGACGCTATTTTTGGGAGAATATTTATCTGTCTTAAATTTGTTAGAAATTCTTGATTTGAGACGTTTTAGGGACAAGAATCTTTGTATAGTCAAGAAAATTTTTGGATTAAAAATTAAGCCTGATTTTTTAGATGCTTATAATTATTTTTTTCAGGACTGCAAAGATGTGGAAAGAGTTGTAGGTTGAGATGGATAAATTATTTAAGACCAGATATAAGACGAGGAAGGTTTACACCTGAGGAAGAGAAGTTGATCATCAGCCTTCATGGAGCTGTTGGAAATAGGTAATTTCATTTATTTTAATTAATTTCTTACCCATTGTTATTAATTCAGACGAGGAAGGGCTAGTTCGATGTTTCCAAGATAAAACTAAGAAAATTAATGTTACTTGCATTCATCATGACTTGAAAAACTCTCCCATACTCGAACATTCCAACATTTGTTTCTTAATATGTTATTTAACTTTGAATTATTATTTTATATTTAAAAACTTAGTTTTAATTGATTTTGAAGGTTAAAATAACAAAATATATTATTTTTCACTCAAGATAAGCATAATTATATACTCACATACAATACTCAAATTTGGCAAATTGGAGGAGATGAGTTTTTAATTAGAGGACTTACTCAAAAGCTCAAATTAGTAGCAACATCAATTTTCAACTATCTTATTCTTTGTTTAATTAATTATTTCTTGAGTAACTTATACTATAAATTTAGTGTCCAATATGGGCTTTGAACAAGTTTTAAAAATGATATATACATGAATGGTACTTTTAACCTAGATATTACACATAATTAGTATAATACTTTATTTTAGAGCATTTAAGATCGTTCATAACATATTCTGTAATATTTATTGTAATATATAATATTATAAAAAAAATATTATAAAAATATTATAGAGGATTCGAATAGTTTTCAGAATATACTCTTAGGTACAAAATGCATTTTAGAAGACGTTAGAATGACAATTTCATGGGTTGAACTTGATAGAACATGTCTAGGAATTTATTTACATACAAGTATTACTAGTAGTAGTTTTCTTGACCGGGTCAAAAGGCTAATGTCTTGGGAGTACATGCTAAGTATCTTCTTCTTCTAAACTAATAATAATTATTATTATTTGAATTTTGATCACTTTAATTGCACTCAATTTAGTATTAATTAATTAATTAATATTTTCTAACATGTGAAAATTAAAAAATTTTGCAGATGGGCACATATAGCAAGTCATTTACCAGGAAGAACAGATAATGAAATCAAGAATTATTGGAATTCATGGATTAAAAAGAAAATTCGAAAACCTTCTTCTATTACAACACCTTCATCAACATTATTATTACCGAATAATAATATTATTACACCAAATAATAATAATACTAATAATTCTTCTGATCCTCAACAACCTCAATTTAATTTCACTACAAATCAATTAGAAAATATTATAAATCATCATCATCCTCCTCCTCCTCCTCAAGATAATTTTATTACAACAAAATTACCCTCACAAATTCAAGACTCCATTTTTACTCCTCCAATATCAACCGGTCCAATGTTCATGTTTGACACTAATAATAATCACCAACTTTTTCAAGAAAATACCATTAGTAGCTGGCCGATGATGGTTCAAACGACGACGTTTACAATGGGATTGGATTCGACTAATAATAATTATTTACCCCCGTTAATAGATAATAATATGGTGGCACAGCATGCTGATACAGACATACAATGTTCTAACATAAATGATCACGTGGTGGAGGGTCAAATAACGTTAGATGATCATCAGCTGAATCAATGGGTGCAAGAAACAAATGATGAACAATGTCCTAATGGATTTTTGTTTTGGGACCAAAGTGATCATCATCAAGGCCAGACAATTGGAGGGGAAGAATTACAAGAATCTTTACCAAGTAATACTACATCAAATATGGGAGCTCTTTTATCGTATCCTTCTCCTCTATAAATTAATTAATTTGTTTTCT
CDS:
CRO_T006824
ATGGGGCACCATTCATGTTGCAACCAGCAGAAGGTTAAAAGAGGGCTATGGTCACCTGAAGAAGATGAGAAATTAATTAGATATATTACTACTCATGGCTATGGTTGCTGGAGTGAAGTTCCTGAAAAAGCTGGACTGCAAAGATGTGGAAAGAGTTGTAGGTTGAGATGGATAAATTATTTAAGACCAGATATAAGACGAGGAAGGTTTACACCTGAGGAAGAGAAGTTGATCATCAGCCTTCATGGAGCTGTTGGAAATAGATGGGCACATATAGCAAGTCATTTACCAGGAAGAACAGATAATGAAATCAAGAATTATTGGAATTCATGGATTAAAAAGAAAATTCGAAAACCTTCTTCTATTACAACACCTTCATCAACATTATTATTACCGAATAATAATATTATTACACCAAATAATAATAATACTAATAATTCTTCTGATCCTCAACAACCTCAATTTAATTTCACTACAAATCAATTAGAAAATATTATAAATCATCATCATCCTCCTCCTCCTCCTCAAGATAATTTTATTACAACAAAATTACCCTCACAAATTCAAGACTCCATTTTTACTCCTCCAATATCAACCGGTCCAATGTTCATGTTTGACACTAATAATAATCACCAACTTTTTCAAGAAAATACCATTAGTAGCTGGCCGATGATGGTTCAAACGACGACGTTTACAATGGGATTGGATTCGACTAATAATAATTATTTACCCCCGTTAATAGATAATAATATGGTGGCACAGCATGCTGATACAGACATACAATGTTCTAACATAAATGATCACGTGGTGGAGGGTCAAATAACGTTAGATGATCATCAGCTGAATCAATGGGTGCAAGAAACAAATGATGAACAATGTCCTAATGGATTTTTGTTTTGGGACCAAAGTGATCATCATCAAGGCCAGACAATTGGAGGGGAAGAATTACAAGAATCTTTACCAAGTAATACTACATCAAATATGGGAGCTCTTTTATCGTATCCTTCTCCTCTATAA
Transcript:
CRO_T006824
ATGGGGCACCATTCATGTTGCAACCAGCAGAAGGTTAAAAGAGGGCTATGGTCACCTGAAGAAGATGAGAAATTAATTAGATATATTACTACTCATGGCTATGGTTGCTGGAGTGAAGTTCCTGAAAAAGCTGGACTGCAAAGATGTGGAAAGAGTTGTAGGTTGAGATGGATAAATTATTTAAGACCAGATATAAGACGAGGAAGGTTTACACCTGAGGAAGAGAAGTTGATCATCAGCCTTCATGGAGCTGTTGGAAATAGATGGGCACATATAGCAAGTCATTTACCAGGAAGAACAGATAATGAAATCAAGAATTATTGGAATTCATGGATTAAAAAGAAAATTCGAAAACCTTCTTCTATTACAACACCTTCATCAACATTATTATTACCGAATAATAATATTATTACACCAAATAATAATAATACTAATAATTCTTCTGATCCTCAACAACCTCAATTTAATTTCACTACAAATCAATTAGAAAATATTATAAATCATCATCATCCTCCTCCTCCTCCTCAAGATAATTTTATTACAACAAAATTACCCTCACAAATTCAAGACTCCATTTTTACTCCTCCAATATCAACCGGTCCAATGTTCATGTTTGACACTAATAATAATCACCAACTTTTTCAAGAAAATACCATTAGTAGCTGGCCGATGATGGTTCAAACGACGACGTTTACAATGGGATTGGATTCGACTAATAATAATTATTTACCCCCGTTAATAGATAATAATATGGTGGCACAGCATGCTGATACAGACATACAATGTTCTAACATAAATGATCACGTGGTGGAGGGTCAAATAACGTTAGATGATCATCAGCTGAATCAATGGGTGCAAGAAACAAATGATGAACAATGTCCTAATGGATTTTTGTTTTGGGACCAAAGTGATCATCATCAAGGCCAGACAATTGGAGGGGAAGAATTACAAGAATCTTTACCAAGTAATACTACATCAAATATGGGAGCTCTTTTATCGTATCCTTCTCCTCTATAAATTAATTAATTTGTTTTCT
Protein:
CRO_T006824
MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGAVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKPSSITTPSSTLLLPNNNIITPNNNNTNNSSDPQQPQFNFTTNQLENIINHHHPPPPPQDNFITTKLPSQIQDSIFTPPISTGPMFMFDTNNNHQLFQENTISSWPMMVQTTTFTMGLDSTNNNYLPPLIDNNMVAQHADTDIQCSNINDHVVEGQITLDDHQLNQWVQETNDEQCPNGFLFWDQSDHHQGQTIGGEELQESLPSNTTSNMGALLSYPSPL*

Genome:

CRO_T006824

ATGGGGCACCATTCATGTTGCAACCAGCAGAAGGTTAAAAGAGGGCTATGGTCACCTGAAGAAGATGAGAAATTAATTAGATATATTACTACTCATGGCTATGGTTGCTGGAGTGAAGTTCCTGAAAAAGCTGGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAAATATTTTTCTTTCTTTAAGTATAATTTCACTTAAATTAATTCATGAGCATTAATATTAATCCTAATTACCGATGCTATTTTTAAGAGTACATTTATCATTTTCATCCAGTTGAAATTCTTGATATTTGAGACGTTTTAATGATGGAATCTATAGTTCCAAATTTTATTTATTTATTTTTTTTGGTAGTGTACTTAAGTATGTATGAAGACAATTGAGCGTTCTTAATCCCTAATTCGGGACGCTATTTTTGGGAGAATATTTATCTGTCTTAAATTTGTTAGAAATTCTTGATTTGAGACGTTTTAGGGACAAGAATCTTTGTATAGTCAAGAAAATTTTTGGATTAAAAATTAAGCCTGATTTTTTAGATGCTTATAATTATTTTTTTCAGGACTGCAAAGATGTGGAAAGAGTTGTAGGTTGAGATGGATAAATTATTTAAGACCAGATATAAGACGAGGAAGGTTTACACCTGAGGAAGAGAAGTTGATCATCAGCCTTCATGGAGCTGTTGGAAATAGGTAATTTCATTTATTTTAATTAATTTCTTACCCATTGTTATTAATTCAGACGAGGAAGGGCTAGTTCGATGTTTCCAAGATAAAACTAAGAAAATTAATGTTACTTGCATTCATCATGACTTGAAAAACTCTCCCATACTCGAACATTCCAACATTTGTTTCTTAATATGTTATTTAACTTTGAATTATTATTTTATATTTAAAAACTTAGTTTTAATTGATTTTGAAGGTTAAAATAACAAAATATATTATTTTTCACTCAAGATAAGCATAATTATATACTCACATACAATACTCAAATTTGGCAAATTGGAGGAGATGAGTTTTTAATTAGAGGACTTACTCAAAAGCTCAAATTAGTAGCAACATCAATTTTCAACTATCTTATTCTTTGTTTAATTAATTATTTCTTGAGTAACTTATACTATAAATTTAGTGTCCAATATGGGCTTTGAACAAGTTTTAAAAATGATATATACATGAATGGTACTTTTAACCTAGATATTACACATAATTAGTATAATACTTTATTTTAGAGCATTTAAGATCGTTCATAACATATTCTGTAATATTTATTGTAATATATAATATTATAAAAAAAATATTATAAAAATATTATAGAGGATTCGAATAGTTTTCAGAATATACTCTTAGGTACAAAATGCATTTTAGAAGACGTTAGAATGACAATTTCATGGGTTGAACTTGATAGAACATGTCTAGGAATTTATTTACATACAAGTATTACTAGTAGTAGTTTTCTTGACCGGGTCAAAAGGCTAATGTCTTGGGAGTACATGCTAAGTATCTTCTTCTTCTAAACTAATAATAATTATTATTATTTGAATTTTGATCACTTTAATTGCACTCAATTTAGTATTAATTAATTAATTAATATTTTCTAACATGTGAAAATTAAAAAATTTTGCAGATGGGCACATATAGCAAGTCATTTACCAGGAAGAACAGATAATGAAATCAAGAATTATTGGAATTCATGGATTAAAAAGAAAATTCGAAAACCTTCTTCTATTACAACACCTTCATCAACATTATTATTACCGAATAATAATATTATTACACCAAATAATAATAATACTAATAATTCTTCTGATCCTCAACAACCTCAATTTAATTTCACTACAAATCAATTAGAAAATATTATAAATCATCATCATCCTCCTCCTCCTCCTCAAGATAATTTTATTACAACAAAATTACCCTCACAAATTCAAGACTCCATTTTTACTCCTCCAATATCAACCGGTCCAATGTTCATGTTTGACACTAATAATAATCACCAACTTTTTCAAGAAAATACCATTAGTAGCTGGCCGATGATGGTTCAAACGACGACGTTTACAATGGGATTGGATTCGACTAATAATAATTATTTACCCCCGTTAATAGATAATAATATGGTGGCACAGCATGCTGATACAGACATACAATGTTCTAACATAAATGATCACGTGGTGGAGGGTCAAATAACGTTAGATGATCATCAGCTGAATCAATGGGTGCAAGAAACAAATGATGAACAATGTCCTAATGGATTTTTGTTTTGGGACCAAAGTGATCATCATCAAGGCCAGACAATTGGAGGGGAAGAATTACAAGAATCTTTACCAAGTAATACTACATCAAATATGGGAGCTCTTTTATCGTATCCTTCTCCTCTATAAATTAATTAATTTGTTTTCT

CDS:

Transcript:

Protein:

Gene Ontology

GO term	Description	Category
--	--	--

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Pathway ID
--	--	--	--	--

PlantCyC

Gene	Enzyme ID	Description	Pathway	Pathway id
--	--	--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.28	Myb_DNA-binding	14	61	2.6e-15
PF00249.28	Myb_DNA-binding	67	111	1.2e-15

Expression pattern

SRA Experiment	Description	FPKM
ERR364390	mixed tissue CK	1.239025
SRR122236	mixed tissue RA CK	4.88012
SRR122237	mixed tissue RB CK	4.912575
SRR122250	callus YE 0.3mg/ml CK	0.225663
SRR122247	callus YE 0.3mg/ml 6h	0.131296
SRR122248	callus YE 0.3mg/ml 12h	0
SRR122249	callus YE 0.3mg/ml 24h	0.0701486
SRR122242	callus MeJA 100um 0h	0.396956
SRR122246	callus MeJA 100um 6h	0
SRR122240	callus MeJA 100um 12h	0
SRR122241	callus MeJA 100um 24h	0.0780472
SRR122239	flower CK 1	0.106794
SRR1271859	flower CK 2	0.0797936
SRR1144633	healthy flowers CK	0.55172
SRR1144634	flowers PnWB infected	1.40807
SRR122257	hairy root CK	0.135929
SRR122258	hairy root MeJA 250um CK	0
SRR122259	hairy root MeJA 250um 24h	0
SRR122256	hairy root RebH F CK	0.240377
SRR122255	hairy root TDCi CK	0.305569
SRR122260	hairy root TDCi MeJA 250um CK	0
SRR122261	hairy root TDCi MeJA 250um 24h	0.676296
SRR1820161	Hairy roots CK BAI1 14	0
SRR1820157	Hairy roots CK BAI1 18	0
SRR1820149	Hairy roots CK BAI1 19	0.0982873
SRR1820238	Hairy roots CK GUS 3	0
SRR1820233	Hairy roots CK GUS 4	0
SRR1820326	Hairy roots CK GUS 5	0
SRR2098821	hairy roots OE AS CK rep1	0.146184
SRR2099440	hairy roots OE AS CK rep2	0.0274241
SRR122252	immature leaf CK	0
SRR342023	leaf CK 1	0
SRR342022	leaf CK 2	0
SRR342019	leaf CK 3	0.06429205
SRR342017	leaf CK 4	0
SRR1271857	leaf CK 5	0
SRR122251	mature leaf CK	0
SRR648705	root CK 1	0
SRR1271858	root CK 2	5.982735
SRR122254	root CK 3	8.18632
SRR648707	root MeJA 24h	0
SRR648709	root MeJA 24h DSN normalized	0
SRR837772	seedling CK	8.992985
SRR122243	sterile seedlings AE CK 1	2.61083
SRR122245	sterile seedlings AE CK 2	0.107208
SRR122244	sterile seedlings AF MeJA 6um 12d	2.6966
SRR122253	stem CK	4.22755
SRR646572	shoots CK	1.58255
SRR647068	shoots MeJA 6h 1	10.96985
SRR646596	shoots MeJA 6h 2	11.31615
SRR646604	shoots MeJA 24h	61.25065
SRR924147	suspension cells EX ORCA2 CK	0
SRR924148	suspension cells EX ORCA3 CK	0

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