miRNA detailed information

miRNA detail image

detail
more details in UCSC

Location informaition

TypeIDScaffoldStartEndStrand
maturecro-novel-102scaffold_30629485535355330-
precursorcro-NOVEL-102scaffold_30629485535555173-

Sequence and structure information

Mature sequence[cro-novel-102]

CGGAUCCUCUAUAACAUUUCUUAU

Stem-loop sequence[cro-NOVEL-102]

UUCGGAUCCUCUAUAACAUUUCUUAUAACACUCUCUGUAACAUUCCUAAUUUGAUAUAUUUUAUUAAUAAAACUUACCAAAUAAAAGAUAAACUCUAAAAAAAGAAUAAACUGUAAGGAAAAAAAUAUACUAUAAAAAAAAUGUUAUAAGAAAUAUUAAAUAAAAUGUUACAGAAGAUCUGAG

Secondary structure of stem-loop sequence

To make high resolution picture for your own, please download the .ps file.


miRNA target information

Target geneAlignmentAnnotationExpectionMethod
CRO_T001627
 ncRNA:24UAUUCUUUACAAUAUCUCCUAGGC1
   |*|=||||||||||||*||||||| 
 targets:1100ACAGGAAAUGUUAUAGUGGAUCCG1123
conserved hypothetical protein1.5psRNATarget[Detail]
CRO_T002883
 ncRNA:24UAU---UCUUUACAAUAUCUCCUAGGC1
   =||---|-||||||||||||||||=|* 
 targets:1015GUACACA-AAAUGUUAUAGAGGAUUCU1040
cytochrome P450, family 71, subfamily B, polypeptide2.5psRNATarget[Detail]
CRO_T002883
 ncRNA:24UAUUCUUUACAAUAUCUCCUAGGC1
   |*||*||=||*||||||||||||* 
 targets:469ACAAAAAGUGAUAUAGAGGAUCCU492
cytochrome P450, family 71, subfamily B, polypeptide3psRNATarget[Detail]
CRO_T005888
 ncRNA:24UAUUCUUUACAAUAUCUCCUAGGC1
   |||--||||||||*|||||||||* 
 targets:3427AUA--AAAUGUUAGAGAGGAUCCU3448
PQQ-like domain containing protein2.5psRNATarget[Detail]
CRO_T006754
 ncRNA:24UAUUCUUUACAAUAUCUCCUAGGC1
   ||==||||||||||||=||||||* 
 targets:772AUGGGAAAUGUUAUAGGGGAUCCU795
hypothetical protein2.5psRNATarget[Detail]
CRO_T006824
 ncRNA:24UAUUCUUUACAAUAUCUCCUAGGC1
   ||||-||||*|||||||||||=|| 
 targets:1301AUAA-AAAUAUUAUAGAGGAUUCG1323
myb domain protein2.5psRNATarget[Detail]
CRO_T010075
 ncRNA:24UAUU---CUUUACAAUAUCUCCUAGGC1
   |||=---|=|||||||||*|||||||| 
 targets:260AUAGAAUGGAAUGUUAUAUAGGAUCCG286
P-loop containing nucleoside triphosphate hydrolases superfamily protein2.5psRNATarget[Detail]
CRO_T010570
 ncRNA:24UAUU--CUUUACAAUAUCUCCUAGGC1
   *|||--|||=|||||*|||||||||| 
 targets:730UUAAAUGAAGUGUUACAGAGGAUCCG755
Restriction endonuclease, type II-like superfamily protein2.5psRNATarget[Detail]
CRO_T014523
 ncRNA:24UAUUCUUUACAAUAUCUCCUAGGC1
   ||||*|||||||||||||||||** 
 targets:9068AUAAUAAAUGUUAUAGAGGAUCAA9091
Root hair defective 3 GTP-binding protein (RHD3)2.5psRNATarget[Detail]
CRO_T020194
 ncRNA:24UA--UUCUUUACAAUAUCUCCUAGGC1
   ||--||||=||||||||||||||||| 
 targets:7657AUCCAAGAGAUGUUAUAGAGGAUCCG7682
elongation defective 1 protein / ELD1 protein1psRNATarget[Detail]
CRO_T027539
 ncRNA:24UAUUCUUUACAAUAUCUCCUAGGC1
   |*|||||=|||||||||||||||* 
 targets:250ACAAGAAGUGUUAUAGAGGAUCCA273
Nodulin MtN3 family protein2psRNATarget[Detail]
CRO_T031304
 ncRNA:24UAUUCUUUACAAUAUCUCCUAGGC1
   |*||||||||||||||||||*||* 
 targets:1422ACAAGAAAUGUUAUAGAGGAACCA1445
nodulin MtN21 /EamA-like transporter family protein2.5psRNATarget[Detail]
CRO_T032944
 ncRNA:24UAUU--CUUUACAAUAUCUCCUAGGC1
   ||||--|=|||||||||||||||||* 
 targets:6583AUAAAAGGAAUGUUAUAGAGGAUCCC6608
DEA(D/H)-box RNA helicase family protein2psRNATarget[Detail]

Expression pattern

TissueTreatFPKM value
seedlingcontrol49.7
seedlingMeJA treatment 1h25.97
seedlingMeJA treatment 8h16.71
seedlingMeJA treatment 24h28.48
TOP

Maintained by Jiajie She & Hengyu Yan in Zhen Su's Lab | China Agricultural University
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