CRO_T010570's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T010570 | Restriction endonuclease, type II-like superfamily protein |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT5G41150 | 0 | UVH1|ULTRAVIOLET HYPERSENSITIVE 1 |
| Arabidopsis thaliana | AT4G17070 | 6.00E-121 | peptidyl-prolyl cis-trans isomerases |
| Arabidopsis thaliana | AT4G30880 | 3.00E-04 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
| Arabidopsis thaliana | AT1G32280 | 0.001 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | cro-novel-102 | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| TissueCFM000260 | positive regulation of mitochondrial translation nucleotide-excision repair involved in interstrand cross-link repair nucleotide-excision repair, DNA incision, 5'-to lesion modulation by symbiont of host calcium or calmodulin-mediated signal transduction copper ion transmembrane transport mitochondrial respiratory chain complex IV assembly resolution of meiotic recombination intermediates Hippo signaling pathway Mineral absorption Nucleotide excision repair nucleotide-excision repair factor 1 complex protein sumoylation double-strand break repair via homologous recombination protein tag copper ion transmembrane transporter activity single-stranded DNA endodeoxyribonuclease activity prefoldin complex integral component of mitochondrial inner membrane Ras signaling pathway | tissue preferential network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T010570 | scaffolds.min_1000bp | scaffold_2993248 | 2049 | 19653 | - |
Gene detail image
| Genome: |
| CRO_T010570 |
| CDS: |
| CRO_T010570 |
| Transcript: |
| CRO_T010570 |
| Protein: |
| CRO_T010570 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0000014 | single-stranded DNA endodeoxyribonuclease activity | molecular_function |
| GO:0000110 | nucleotide-excision repair factor 1 complex | cellular_component |
| GO:0000712 | resolution of meiotic recombination intermediates | biological_process |
| GO:0000724 | double-strand break repair via homologous recombination | biological_process |
| GO:0003684 | damaged DNA binding | molecular_function |
| GO:0003697 | single-stranded DNA binding | molecular_function |
| GO:0006296 | nucleotide-excision repair, DNA incision, 5'-to lesion | biological_process |
| GO:0006979 | response to oxidative stress | biological_process |
| GO:0016853 | isomerase activity | molecular_function |
| GO:1901255 | nucleotide-excision repair involved in interstrand cross-link repair | biological_process |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| K10848 | ERCC4 | EC:3.1. EC:. EC: | Nucleotide excision repair | ko03420 |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF14368.3 | LTP_2 | 9 | 99 | 3.2e-10 |
| PF14368.3 | LTP_2 | 114 | 177 | 3.9e-05 |
| PF00160.18 | Pro_isomerase | 316 | 460 | 8.5e-08 |
| PF02732.12 | ERCC4 | 1183 | 1313 | 5.2e-21 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 55.16665 | |
| SRR122236 | mixed tissue RA CK | 21.01425 | |
| SRR122237 | mixed tissue RB CK | 22.0177 | |
| SRR122250 | callus YE 0.3mg/ml CK | 10.4076 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 35.9894 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 22.3263 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 17.7634 | |
| SRR122242 | callus MeJA 100um 0h | 20.8053 | |
| SRR122246 | callus MeJA 100um 6h | 14.1687 | |
| SRR122240 | callus MeJA 100um 12h | 15.9784 | |
| SRR122241 | callus MeJA 100um 24h | 24.7005 | |
| SRR122239 | flower CK 1 | 38.7845 | |
| SRR1271859 | flower CK 2 | 16.8617 | |
| SRR1144633 | healthy flowers CK | 34.8293 | |
| SRR1144634 | flowers PnWB infected | 11.34935 | |
| SRR122257 | hairy root CK | 95.4004 | |
| SRR122258 | hairy root MeJA 250um CK | 58.5244 | |
| SRR122259 | hairy root MeJA 250um 24h | 52.27 | |
| SRR122256 | hairy root RebH F CK | 105.745 | |
| SRR122255 | hairy root TDCi CK | 85.2167 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 46.918 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 33.894 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 97.4298 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 61.6546 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 52.2217 | |
| SRR1820238 | Hairy roots CK GUS 3 | 62.0968 | |
| SRR1820233 | Hairy roots CK GUS 4 | 51.6121 | |
| SRR1820326 | Hairy roots CK GUS 5 | 36.73565 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 60.9236 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 43.3304 | |
| SRR122252 | immature leaf CK | 7.52913 | |
| SRR342023 | leaf CK 1 | 6.96671 | |
| SRR342022 | leaf CK 2 | 7.74662 | |
| SRR342019 | leaf CK 3 | 6.581305 | |
| SRR342017 | leaf CK 4 | 5.747425 | |
| SRR1271857 | leaf CK 5 | 2.033225 | |
| SRR122251 | mature leaf CK | 3.31854 | |
| SRR648705 | root CK 1 | 97.6204 | |
| SRR1271858 | root CK 2 | 47.3659 | |
| SRR122254 | root CK 3 | 12.1431 | |
| SRR648707 | root MeJA 24h | 89.5129 | |
| SRR648709 | root MeJA 24h DSN normalized | 85.6894 | |
| SRR837772 | seedling CK | 8.80987 | |
| SRR122243 | sterile seedlings AE CK 1 | 23.5096 | |
| SRR122245 | sterile seedlings AE CK 2 | 11.9054 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 19.3287 | |
| SRR122253 | stem CK | 25.4469 | |
| SRR646572 | shoots CK | 8.93569 | |
| SRR647068 | shoots MeJA 6h 1 | 10.72245 | |
| SRR646596 | shoots MeJA 6h 2 | 8.74089 | |
| SRR646604 | shoots MeJA 24h | 11.2793 | |
| SRR924147 | suspension cells EX ORCA2 CK | 132.6635 | |
| SRR924148 | suspension cells EX ORCA3 CK | 125.659 |