CRO_T014523's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T014523 | Root hair defective 3 GTP-binding protein (RHD3) |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT1G72960 | 0 | Root hair defective 3 GTP-binding protein (RHD3) |
| Arabidopsis thaliana | AT3G13870 | 0 | GOM8|GOLGI MUTANT 8;RHD3|ROOT HAIR DEFECTIVE 3 |
| Arabidopsis thaliana | AT5G45160 | 0 | RL2|RHD-like2 |
| Arabidopsis thaliana | AT1G72960 | 0 | Root hair defective 3 GTP-binding protein (RHD3) |
| Arabidopsis thaliana | AT3G13870 | 0 | GOM8|GOLGI MUTANT 8;RHD3|ROOT HAIR DEFECTIVE 3 |
| Arabidopsis thaliana | AT5G45160 | 0 | RL2|RHD-like2 |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | cro-novel-102 | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| CFinderADM001649 | protein import into nucleus, translocation ribosomal protein import into nucleus protein import into nucleus, docking ubiquitin-ubiquitin ligase activity nuclear periphery nuclear membrane NLS-bearing protein import into nucleus ubiquitin ligase complex Ran GTPase binding nuclear localization sequence binding ubiquitin-dependent protein catabolic process protein transporter activity GTPase activity ligase activity protein ubiquitination endoplasmic reticulum membrane GTP binding | global network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T014523 | scaffolds.min_1000bp | scaffold_3004394 | 79400 | 89357 | + |
Gene detail image
| Genome: |
| CRO_T014523 |
| CDS: |
| CRO_T014523 |
| Transcript: |
| CRO_T014523 |
| Protein: |
| CRO_T014523 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0003924 | GTPase activity | molecular_function |
| GO:0005525 | GTP binding | molecular_function |
| GO:0005789 | endoplasmic reticulum membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF05879.9 | RHD3 | 46 | 75 | 3.3e-10 |
| PF05879.9 | RHD3 | 101 | 786 | 2e-275 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 54.1484 | |
| SRR122236 | mixed tissue RA CK | 45.0771 | |
| SRR122237 | mixed tissue RB CK | 43.36105 | |
| SRR122250 | callus YE 0.3mg/ml CK | 148.113 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 139.496 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 145.401 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 127.729 | |
| SRR122242 | callus MeJA 100um 0h | 141.154 | |
| SRR122246 | callus MeJA 100um 6h | 128.282 | |
| SRR122240 | callus MeJA 100um 12h | 173.408 | |
| SRR122241 | callus MeJA 100um 24h | 133.629 | |
| SRR122239 | flower CK 1 | 112.24 | |
| SRR1271859 | flower CK 2 | 70.5694 | |
| SRR1144633 | healthy flowers CK | 130.1905 | |
| SRR1144634 | flowers PnWB infected | 98.22895 | |
| SRR122257 | hairy root CK | 118.15 | |
| SRR122258 | hairy root MeJA 250um CK | 150.061 | |
| SRR122259 | hairy root MeJA 250um 24h | 176.263 | |
| SRR122256 | hairy root RebH F CK | 67.1294 | |
| SRR122255 | hairy root TDCi CK | 78.1422 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 108.715 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 151.162 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 122.726 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 120.411 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 111.594 | |
| SRR1820238 | Hairy roots CK GUS 3 | 121.988 | |
| SRR1820233 | Hairy roots CK GUS 4 | 123.576 | |
| SRR1820326 | Hairy roots CK GUS 5 | 130.4605 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 128.214 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 75.4398 | |
| SRR122252 | immature leaf CK | 60.445 | |
| SRR342023 | leaf CK 1 | 77.19035 | |
| SRR342022 | leaf CK 2 | 76.23535 | |
| SRR342019 | leaf CK 3 | 69.9696 | |
| SRR342017 | leaf CK 4 | 69.61955 | |
| SRR1271857 | leaf CK 5 | 48.48685 | |
| SRR122251 | mature leaf CK | 87.6183 | |
| SRR648705 | root CK 1 | 25.70975 | |
| SRR1271858 | root CK 2 | 72.4005 | |
| SRR122254 | root CK 3 | 132.346 | |
| SRR648707 | root MeJA 24h | 33.59805 | |
| SRR648709 | root MeJA 24h DSN normalized | 33.4012 | |
| SRR837772 | seedling CK | 48.03325 | |
| SRR122243 | sterile seedlings AE CK 1 | 77.8325 | |
| SRR122245 | sterile seedlings AE CK 2 | 106.867 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 80.8187 | |
| SRR122253 | stem CK | 102.827 | |
| SRR646572 | shoots CK | 110.422 | |
| SRR647068 | shoots MeJA 6h 1 | 123.098 | |
| SRR646596 | shoots MeJA 6h 2 | 122.44 | |
| SRR646604 | shoots MeJA 24h | 98.53965 | |
| SRR924147 | suspension cells EX ORCA2 CK | 31.9647 | |
| SRR924148 | suspension cells EX ORCA3 CK | 38.19275 |